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ReproRehab 2022

Educational Leadership Team

Name Email
Sook-Lei Liew sliew@usc.edu
James M. Finley jmfinley@pt.usc.edu
Keith Lohse Keith.Lohse@health.utah.edu
David Kennedy david.kennedy@umassmed.edu
Jean-Baptiste Poline jbpoline@gmail.com

This github repository has information and materials for the ReproRehab program. If you're new to github, you can click the "clone or download" button on this repository to download a zip file.

SCHEDULE


Everyone: W1 | W2 | W3

Pod-specific: W4-W7

Everyone: W8-24


Week 1 (Oct. 10) - Intro to ReproRehab

Why do we need reproducible methods in rehabilitation? Overview and principles of reproducible science. (Slack, Github)

Meetings Date Time Location
ReproRehab All Hands October 12 3p EST Zoom
Pods Contact TA --- Zoom
Content Video
Welcome to ReproRehab (15:40) YouTube Views YouTube Comments YouTube Likes
Principles of Reproducible Science (1:12:44) YouTube Views YouTube Comments YouTube Likes
ReproRehab Housekeeping (8:49) YouTube Views YouTube Comments YouTube Likes
Meet your 2022-2023 ReproRehab Leadership Team and TAs (23:53) YouTube Views YouTube Comments YouTube Likes

Week 2 (Oct 17) - Reproducible Data Management/Organization

Basics of data organization, file formatting, naming for machine-readable data, meta- data. How to approach research questions with reproducibility in mind.

Meetings Date Time Location
Pods Contact TA --- Zoom
Content Video
Intro to Reproducible Principles for Data Analysis and Management (24:52) YouTube Views YouTube Comments YouTube Likes
Introduction to Data Analysis (39:42) YouTube Views YouTube Comments YouTube Likes
Data Standardization: A (very) short introduction (26:22) YouTube Views YouTube Comments YouTube Likes
DataLad Introduction (optional but highly recommended) (27:15) YouTube Views YouTube Comments YouTube Likes

Week 3 (Oct 24) - Open Datasets

FAIR data principles, open-source datasets, data transfer agreements, and ReproRehabDB (our database for courses/open datasets).

Meetings Date Time Location
Pods Contact TA --- Zoom
Content Video
Introduction to Week 3 (3:26) YouTube Views YouTube Comments YouTube Likes
Week 3: Introduction to FAIR Data (51:14) YouTube Views YouTube Comments YouTube Likes
NIH Data Sharing Policy (1:27:37) YouTube Views YouTube Comments YouTube Likes
Week 3: Open Data and Data Sharing in Rehabilitation (Part 2) (25:58) YouTube Views YouTube Comments YouTube Likes
Week 3: How to use ReproRehabDB (3:38) YouTube Views YouTube Comments YouTube Likes

WEEKS 4-7: POD-SPECIFIC CONTENT

For these four weeks, pods will select a curriculum based on learner’s needs.

ReproRehab will provide introductory and/or intermediate course curricula with asynchronous videos and hands-on exercises in Matlab, R, and/or python, as well as on data archiving, data management, and more (and pods are welcome to chose course content from outside sources as well).

Meetings Date Time Location
Pods 1/wk Contact TA Zoom
Content Playlist
ReproRehab: Introduction to R YouTube Playlist
ReproRehab: Introduction to Matlab Coming Soon
ReproRehab: Very First Time Programming in Python YouTube Playlist
ABCD-ReproNim Machine Learning Playlist YouTube Playlist

Week 4 (Oct 31)

Meetings Date Time Location
Pods Contact TA --- Zoom

Week 5 (Nov 7)

Meetings Date Time Location
Pods Contact TA --- Zoom

Week 6 (Nov 14)

Meetings Date Time Location
NeuroRehab Social (SfN) November 14 6:30p - 8:30p Social Tap
Pods Contact TA --- Zoom

Nov 21 - No class, Thanksgiving Break

Week 7 (Nov 28)

Meetings Date Time Location
Pods Contact TA --- Zoom

WEEKS 8 - 24: EVERYONE

Week 8 (Dec 5) - Launching into self-guided learning

What types of online learning opportunities are available to rehabilitation researchers?

Meetings Date Time Location
ReproRehab All Hands December 5 11 - 12:30p PST Zoom
Pods Contact TA --- Zoom
Content Playlist
Week 8: Where do we go from here? From the bootcamp to self guided learning YouTube Playlist

Weeks 9-24 (Dec 12 - Apr 3) - 4-MONTH SELF-GUIDED PROGRAM

Learning from online course materials and applying it to your own research; ASNR Meet-up

Meetings Date Time Location
Pods (OPTIONAL) Contact TA --- Zoom
ASNR Attendees TBD --- ASNR
Content Playlist
Find additional content on ReproRehabDB YouTube Playlist

If students have questions, post in appropriate Slack channel.

TAs and ELT have office hours.

Week 24 (Apr 3) - Follow-up and evaluations

Presentations by Learners and TAs

Meetings Date Time Location
Final ReproRehab All Hands TBD TBD Zoom

STAY UP TO DATE

Twitter

Website

YouTube

Languages

  • MATLAB 62.7%
  • Jupyter Notebook 18.8%
  • R 18.5%