Skip to content
Avatar

Achievements

Achievements

Organizations

@VEuPathDB-ontology
Block or Report

Block or report turbomam

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Pinned

  1. The Ontology for Biomedical Investigations

    Makefile 35 19

  2. Conversion from Synthea CSV to OMOP CDM

    R 40 31

  3. Hosts the TURBO Ontology and supporting files.

    Python 3

  4. Pipeline to generate an RDF knowledgegraph that links MonDO disease classes to ICD code terms.

    R

  5. Here's a first step in modelling assays* with OBO* terms. It generates a template that can be executed by the ROBOT* application, leading to an RDF data model. Assays currently in scope have a spec…

    R 1

  6. Pipeline that maps strings describing medication orders to RxNorm terms, and generates an RDF knowledgegraph that links those strings to multiple ontologies including DrOn, ChEBI, ATC and NDF-RT.

    R 1 1

Contribution activity

June 2021

Created 4 repositories

Created a pull request in microbiomedata/nmdc-schema that received 14 comments

example of finding local part of IDs #69

Issue #69 Checking what common local parts are before asserting them in the nmdc-schema linkml

+1,091 −2 14 comments
Opened 4 other pull requests in 2 repositories
microbiomedata/nmdc-schema
2 open 1 merged
cmungall/gold-ontology
1 merged
Reviewed 1 pull request in 1 repository
microbiomedata/nmdc-schema 1 pull request

Created an issue in INCATools/biosample-analysis that received 5 comments

make harmonized_table.db: no sars_cov_2_diag_pcr_ct_value_2 column

% time make target/harmonized_table.db % time make target/harmonized_table.db python ./util/save-harmonized-table-to-sqlite.py target/harmonized-t…

5 comments

Seeing something unexpected? Take a look at the GitHub profile guide.