Cython interface for the GNU Scientific Library (GSL).
Latest commit 211dedc Dec 23, 2016 @twiecki committed on GitHub Merge pull request #25 from molpopgen/gsl_errno
Gsl errno



Date:May 13, 2012
Authors:Thomas Wiecki, thomas.wiecki[at]
Web site:
Copyright:This document has been placed in the public domain.
License:CythonGSL is released under the GPLv3.


CythonGSL provides a Cython interface for the GNU Scientific Library (GSL).

Cython is the ideal tool to speed up numerical computations by converting typed Python code to C and generating Python wrappers so that these compiled functions can be called from Python. Scientific programming often requires use of various numerical routines (e.g. numerical integration, optimization). While SciPy provides many of those tools, there is an overhead associated with using these functions within your Cython code. CythonGSL allows you to shave off that last layer by providing Cython declarations for the GSL which allow you to use this high-quality library from within Cython without any Python overhead.

Fork of PyrexGsl by Mario Pernici (


For a quick demo, see:

Import CythonGSL in your pyx file

In your cython file from which you want to call gsl routines, import gsl like this:

from cython_gsl cimport *

From there you should be able to call any gsl function, see for the GSL reference.

For more examples, check out the examples directory.

Compile your module

Here is what your could look like:

from distutils.core import setup
from Cython.Distutils import Extension
from Cython.Distutils import build_ext
import cython_gsl

    include_dirs = [cython_gsl.get_include()],
    cmdclass = {'build_ext': build_ext},
    ext_modules = [Extension("my_cython_script",



Installing CythonGSL

python build
python install

Installing CythonGSL Unittests

python build
python install
nosetest cython_gsl