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Gen3 Monthly Release 2021.07 qa-covid19.planx-pla.net 1625845274 #1493

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merged 5 commits into from
Jul 13, 2021
Merged

Gen3 Monthly Release 2021.07 qa-covid19.planx-pla.net 1625845274 #1493

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fd89b5f
apply version 2021.07 to qa-covid19.planx-pla.net
themarcelor Jul 9, 2021
618ab63
apply version 2021.07 to qa-covid19.planx-pla.net
themarcelor Jul 9, 2021
5955de3
Merge branch 'master' into chore/apply_202107_to_qa-covid19_planx-pla…
atharvar28 Jul 12, 2021
059be4f
fixing the versions and urls
atharvar28 Jul 12, 2021
10a160c
change the fence version
atharvar28 Jul 12, 2021
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53 changes: 26 additions & 27 deletions qa-covid19.planx-pla.net/manifest.json
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Original file line number Diff line number Diff line change
Expand Up @@ -4,33 +4,32 @@
"That's all I have to say"
],
"versions": {
"arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2021.04",
"augur": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-augur:fix_docker2",
"awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2021.04",
"arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2021.07",
"awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2021.07",
"aws-es-proxy": "quay.io/cdis/aws-es-proxy:0.8",
"covid19-etl": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/covid19-etl:4.8.2",
"covid19-notebook-etl": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/covid19-notebook-etl:4.7.6",
"covid19-bayes-model": "quay.io/cdis/covid19-bayes-model:3.4.3",
"fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:4.29.1",
"indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2021.04",
"peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2021.04",
"pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2021.04",
"revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2021.04",
"sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2021.04",
"portal": "quay.io/cdis/data-portal:feat_WLSmapDataOverlays",
"tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:0.5.0",
"covid19-bayes-model": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/covid19-bayes-model:3.4.3",
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just making sure this was pushed to ECR

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Yes it is pushed to ECR

"fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:5.3.1",
"indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2021.07",
"peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2021.07",
"pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2021.07",
"revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2021.07",
"sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2021.07",
"portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2021.07",
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"tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:2021.07",
"fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
"spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2021.04",
"hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:0.1.5",
"wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2021.04",
"ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2021.04",
"spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2021.07",
"hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2021.07",
"wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2021.07",
"ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2021.07",
"ambassador": "quay.io/datawire/ambassador:1.4.2",
"guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:0.13.0",
"manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2021.04",
"dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2021.04",
"auspice": "quay.io/cdis/gen3-auspice:v2.25.gen3.2.5",
"sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2021.04",
"metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2021.04"
"guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2021.07",
"manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2021.07",
"dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2021.07",
"auspice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-auspice:v2.25.gen3.2.5",
"sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2021.07",
"metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2021.07"
},
"global": {
"environment": "qa-covid19",
Expand Down Expand Up @@ -63,16 +62,16 @@
},
"ssjdispatcher": {
"job_images": {
"indexing": "quay.io/cdis/indexs3client:2021.04"
"indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2021.07"
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}
},
"sower" : [
"sower": [
{
"name": "pelican-export",
"action": "export",
"container": {
"name": "job-task",
"image": "quay.io/cdis/pelican-export:2021.04",
"image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2021.07",
"pull_policy": "Always",
"env": [
{
Expand Down Expand Up @@ -149,7 +148,7 @@
"serviceAccountName": "jobs-qa-covid19-planx-pla-net",
"container": {
"name": "job-task",
"image": "quay.io/cdis/manifest-indexing:2021.04",
"image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifest-indexing:2021.07",
"pull_policy": "Always",
"env": [
{
Expand Down Expand Up @@ -189,7 +188,7 @@
"serviceAccountName": "jobs-qa-covid19-planx-pla-net",
"container": {
"name": "job-task",
"image": "quay.io/cdis/download-indexd-manifest:2021.04",
"image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/download-indexd-manifest:2021.07",
"pull_policy": "Always",
"env": [
{
Expand Down
14 changes: 8 additions & 6 deletions qa-covid19.planx-pla.net/manifests/hatchery/hatchery.json
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
"sidecar": {
"cpu-limit": "1.0",
"memory-limit": "256Mi",
"image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2021.04",
"image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2021.07",
"env": {
"NAMESPACE": "qa-covid19",
"HOSTNAME": "qa-covid19.planx-pla.net"
Expand Down Expand Up @@ -106,10 +106,12 @@
{
"name": "firefox",
"image": "quay.io/cdis/docker-firefox:v1.13.0_ctds.1.0.0",
"volumeMounts": [{
"name": "dshm",
"mountPath": "/dev/shm"
}],
"volumeMounts": [
{
"name": "dshm",
"mountPath": "/dev/shm"
}
],
"securityContext": {
"privileged": true
},
Expand Down Expand Up @@ -146,4 +148,4 @@
"name": "A collection of Jupyter notebooks to explore health outcomes for COVID-19"
}
]
}
}