Mariner: The Gen3 Workflow Execution Service

Mariner is a workflow execution service written in Go for running CWL workflows on Kubernetes. Mariner's API is an implementation of the GA4GH standard WES API.

Key Documentation

All documentation can be found in the docs folder, and key documents are linked below.

• Deploying Mariner to a Gen3 Data Commons
• Quick start
• How To Write A Workflow
• How To Retrieve Workflow Output
• Technical Design and Architecture
• Running CWL Conformance Tests
• CWL User Guide