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ucsd-ccbb · Mar 16, 2018 · 25a4044 · 25a4044
1 parent 410939c
commit 25a4044
Showing 1 changed file with 23 additions and 14 deletions.
diff --git a/docs/VAPr.rst b/docs/VAPr.rst
@@ -1,43 +1,43 @@
-.. _api-reference:
-
 VAPr package
 ============
 
+Submodules
+----------
 
-VAPr.annovar\_output\_parsing
------------------------------
+VAPr.annovar\_output\_parsing module
+------------------------------------
 
 .. automodule:: VAPr.annovar_output_parsing
     :members:
     :undoc-members:
     :show-inheritance:
 
-VAPr.annovar\_running
----------------------
+VAPr.annovar\_running module
+----------------------------
 
 .. automodule:: VAPr.annovar_running
     :members:
     :undoc-members:
     :show-inheritance:
 
-VAPr.chunk\_processing
-----------------------
+VAPr.chunk\_processing module
+-----------------------------
 
 .. automodule:: VAPr.chunk_processing
     :members:
     :undoc-members:
     :show-inheritance:
 
-VAPr.filtering
---------------
+VAPr.filtering module
+---------------------
 
 .. automodule:: VAPr.filtering
     :members:
     :undoc-members:
     :show-inheritance:
 
-VAPr.validation
----------------
+VAPr.validation module
+----------------------
 
 .. automodule:: VAPr.validation
     :members:
@@ -46,8 +46,8 @@ VAPr.validation
 
 .. _vapr-core:
 
-VAPr.vapr\_core
----------------
+VAPr.vapr\_core module
+----------------------
 
 .. automodule:: VAPr.vapr_core
     :members:
@@ -69,3 +69,12 @@ VAPr.vcf\_merging module
     :members:
     :undoc-members:
     :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: VAPr
+    :members:
+    :undoc-members:
+    :show-inheritance: