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Contijoch Research Laboratory

Research Website for Contijoch Research Lab at UC San Diego

Contijoch Research Laboratory

Introduction

This site serves as the home for software development by the laboratory. If you are a lab member, ask Dr. Contijoch for access to private repositories. Otherwise, this site will host code made public.

Public Repositories (reverse chronological order)

  1. Gupta, Kunal et al. "DiFiR-CT: Distance field representation to resolve motion artifacts in computed tomography." Medical Physics. In Press; PMID: 36515381.

  2. Li, Hui et al. "Deep learning automates detection of wall motion abnormalities via measurement of longitudinal strain from ECG-gated CT images." Front Cardiovasc Med. 2022 Dec 15;9:1009445, doi: 10.3389/fcvm.2022.1009445.

  3. Chen, Zhennong et al. "Detection of Left Ventricular Wall Motion Abnormalities from Volume Rendering of 4DCT Cardiac Angiograms Using Deep Learning." Front Cardiovasc Med. 2022 Jul 28;9:919751. doi: 10.3389/fcvm.2022.919751.

  4. Gupta, Kunal et al. “Octree Representation Improves Data Fidelity of Cardiac CT Images and Convolutional Neural Network Semantic Segmentation of Left Atrial and Ventricular Chambers.” Radiology. Artificial intelligence vol. 3,6 e210036. 29 Sep. 2021, doi:10.1148/ryai.2021210036

  5. Colvert, Brendan et al. “Heart-centered positioning and tailored beam-shaping filtration for reduced radiation dose in coronary artery calcium imaging: A Multi-Ethnic Study of Atherosclerosis (MESA) Study.” Medical physics vol. 48,9 (2021): 4966-4977. doi:10.1002/mp.15106

  6. Chen, Zhennong et al. “Automated cardiac volume assessment and cardiac long- and short-axis imaging plane prediction from electrocardiogram-gated computed tomography volumes enabled by deep learning.” European heart journal. Digital health vol. 2,2 311-322. 22 Mar. 2021, doi:10.1093/ehjdh/ztab033

Popular repositories

  1. AI_chamber_segmentation_plane_re-slicing AI_chamber_segmentation_plane_re-slicing Public

    A deep learning (DL) pipeline to simultaneously predict multi-chamber segmentation and all cardiac imaging planes. Author: Zhennong Chen, PhD

    Python 3

  2. 2DUNet_CT_Seg_Final_v_ZC 2DUNet_CT_Seg_Final_v_ZC Public

    a 2D U-Net pipeline to segment heart chambers in CT 3D volumes. Author: Zhennong Chen, PhD.

    Python 2

  3. DL_WMA_by_VR_Final_v_ZC DL_WMA_by_VR_Final_v_ZC Public

    A deep learning pipeline to detect Left Ventricle Wall Motion Abnormality from volume-rendered 4DCT data. Author: Zhennong Chen, PhD

    MATLAB 2

  4. med-img-octnet-adaptation med-img-octnet-adaptation Public

    Forked from griegler/octnet

    Adaptation of OctNet for use in Medical Images

    C++ 1

  5. dv-commandline-utils dv-commandline-utils Public

    Forked from sudomakeinstall/dv-commandline-utils

    C++

  6. dvpy dvpy Public

    Forked from sudomakeinstall/dvpy

    Python 1

Repositories

Showing 10 of 19 repositories

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