Fix github actions #424
Workflow file for this run
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| name: concert tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Print python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -qq libtiff5-dev | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest coverage | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| pip install scikit-image | |
| - name: Test with pytest | |
| run: | | |
| coverage run --source=concert -m pytest -m "not skip_ci" | |
| - name: Convert coverage to xml | |
| if: matrix.python-version == '3.12' | |
| run: | | |
| coverage xml --omit="concert/tests/util/_package/_module.py" | |
| - name: Upload coverage to Codecov | |
| if: matrix.python-version == '3.12' | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| fail_ci_if_error: true | |
| files: ./coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true |