Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

UGENE-7918 add "Presets" feature #1426

Merged
merged 23 commits into from
Sep 29, 2023
Merged

UGENE-7918 add "Presets" feature #1426

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
23 commits
Select commit Hold shift + click to select a range
30e2bab
UGENE-7918 base commit
DmitriiSukhomlinov Sep 13, 2023
1d86f6a
UGENE-7918 remove Primer3SWTask
DmitriiSukhomlinov Sep 13, 2023
2e8824e
UGENE-7918 intermediate commit because I need to rebase
DmitriiSukhomlinov Sep 14, 2023
35d6e61
UGENE-7918 task
DmitriiSukhomlinov Sep 15, 2023
b29dc28
UGENE-7918 done
DmitriiSukhomlinov Sep 18, 2023
ee3aa7f
UGENE-7918 update
DmitriiSukhomlinov Sep 18, 2023
3a774df
UGENE-7918 update
DmitriiSukhomlinov Sep 18, 2023
88342cf
UGENE-7918 update
DmitriiSukhomlinov Sep 18, 2023
f19bc4f
UGENE-7918 GUI test
DmitriiSukhomlinov Sep 18, 2023
3dc29e3
UGENE-7918 update
DmitriiSukhomlinov Sep 18, 2023
5ae27e9
UGENE-7918 xml test
DmitriiSukhomlinov Sep 20, 2023
ddcd4f0
UGENE-7918 translations update
DmitriiSukhomlinov Sep 20, 2023
dd6660f
UGENE-7918 remove unneeded tests
DmitriiSukhomlinov Sep 20, 2023
37be9c5
UGENE-7918 update bundles
DmitriiSukhomlinov Sep 20, 2023
f89d086
UGENE-7918 review fix
DmitriiSukhomlinov Sep 21, 2023
b825f30
UGENE-7918 translations update
DmitriiSukhomlinov Sep 21, 2023
622ce16
UGENE-7918 build fix
DmitriiSukhomlinov Sep 21, 2023
90a12ea
UGENE-7918 update
DmitriiSukhomlinov Sep 22, 2023
e6bff31
UGENE-7918 update
DmitriiSukhomlinov Sep 26, 2023
cc6c930
UGENE-7918 table report
DmitriiSukhomlinov Sep 26, 2023
b2efa4d
UGENE-7918 update
DmitriiSukhomlinov Sep 27, 2023
637328b
UGENE-7918 update translations
DmitriiSukhomlinov Sep 27, 2023
fdcf6f3
UGENE-7918 tests fix
DmitriiSukhomlinov Sep 27, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
181 changes: 181 additions & 0 deletions data/primer3/presets/Default.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,181 @@
PRIMER_FIRST_BASE_INDEX=1
PRIMER_GC_CLAMP=0
PRIMER_INTERNAL_MAX_NS_ACCEPTED=0
PRIMER_INTERNAL_MAX_POLY_X=5
PRIMER_INTERNAL_MAX_SIZE=27
PRIMER_INTERNAL_MIN_3_PRIME_OVERLAP_OF_JUNCTION=3
PRIMER_INTERNAL_MIN_5_PRIME_OVERLAP_OF_JUNCTION=3
PRIMER_INTERNAL_MIN_QUALITY=0
PRIMER_INTERNAL_MIN_SIZE=18
PRIMER_INTERNAL_MIN_THREE_PRIME_DISTANCE=-1
PRIMER_INTERNAL_OPT_SIZE=20
PRIMER_LIBERAL_BASE=0
PRIMER_LIB_AMBIGUITY_CODES_CONSENSUS=1
PRIMER_LOWERCASE_MASKING=0
PRIMER_MAX_END_GC=5
PRIMER_MAX_NS_ACCEPTED=0
PRIMER_MAX_POLY_X=5
PRIMER_MAX_SIZE=27
PRIMER_MIN_3_PRIME_OVERLAP_OF_JUNCTION=4
PRIMER_MIN_5_PRIME_OVERLAP_OF_JUNCTION=7
PRIMER_MIN_END_QUALITY=0
PRIMER_MIN_LEFT_THREE_PRIME_DISTANCE=-1
PRIMER_MIN_QUALITY=0
PRIMER_MIN_RIGHT_THREE_PRIME_DISTANCE=-1
PRIMER_MIN_SIZE=18
PRIMER_NUM_RETURN=5
PRIMER_OPT_SIZE=20
PRIMER_PICK_ANYWAY=0
PRIMER_PICK_INTERNAL_OLIGO=0
PRIMER_PICK_LEFT_PRIMER=1
PRIMER_PICK_RIGHT_PRIMER=1
PRIMER_QUALITY_RANGE_MAX=100
PRIMER_QUALITY_RANGE_MIN=0
PRIMER_SECONDARY_STRUCTURE_ALIGNMENT=0
PRIMER_SEQUENCING_ACCURACY=20
PRIMER_SEQUENCING_INTERVAL=250
PRIMER_SEQUENCING_LEAD=50
PRIMER_SEQUENCING_SPACING=500
PRIMER_THERMODYNAMIC_OLIGO_ALIGNMENT=0
PRIMER_THERMODYNAMIC_TEMPLATE_ALIGNMENT=0
SEQUENCE_FORCE_LEFT_END=-1000000
SEQUENCE_FORCE_LEFT_START=-1000000
SEQUENCE_FORCE_RIGHT_END=-1000000
SEQUENCE_FORCE_RIGHT_START=-1000000
SEQUENCE_START_CODON_POSITION=-2000000
PRIMER_ANNEALING_TEMP=0
PRIMER_DMSO_CONC=0
PRIMER_DMSO_FACTOR=0.6
PRIMER_DNA_CONC=50
PRIMER_DNTP_CONC=0
PRIMER_FORMAMIDE_CONC=0
PRIMER_INSIDE_PENALTY=-1
PRIMER_INTERNAL_DMSO_CONC=0
PRIMER_INTERNAL_DMSO_FACTOR=0.6
PRIMER_INTERNAL_DNA_CONC=50
PRIMER_INTERNAL_DNTP_CONC=0
PRIMER_INTERNAL_FORMAMIDE_CONC=0
PRIMER_INTERNAL_MAX_BOUND=110
PRIMER_INTERNAL_MAX_GC=80
PRIMER_INTERNAL_MAX_HAIRPIN_TH=47
PRIMER_INTERNAL_MAX_LIBRARY_MISHYB=12
PRIMER_INTERNAL_MAX_SELF_ANY=12
PRIMER_INTERNAL_MAX_SELF_ANY_TH=47
PRIMER_INTERNAL_MAX_SELF_END=12
PRIMER_INTERNAL_MAX_SELF_END_TH=47
PRIMER_INTERNAL_MAX_TM=63
PRIMER_INTERNAL_MIN_BOUND=-10
PRIMER_INTERNAL_MIN_GC=20
PRIMER_INTERNAL_MIN_TM=57
PRIMER_INTERNAL_OPT_BOUND=97
PRIMER_INTERNAL_OPT_TM=60
PRIMER_INTERNAL_SALT_DIVALENT=0
PRIMER_INTERNAL_SALT_MONOVALENT=50
PRIMER_INTERNAL_WT_BOUND_GT=0
PRIMER_INTERNAL_WT_BOUND_LT=0
PRIMER_INTERNAL_WT_END_QUAL=0
PRIMER_INTERNAL_WT_GC_PERCENT_GT=0
PRIMER_INTERNAL_WT_GC_PERCENT_LT=0
PRIMER_INTERNAL_WT_HAIRPIN_TH=0
PRIMER_INTERNAL_WT_LIBRARY_MISHYB=0
PRIMER_INTERNAL_WT_NUM_NS=0
PRIMER_INTERNAL_WT_SELF_ANY=0
PRIMER_INTERNAL_WT_SELF_ANY_TH=0
PRIMER_INTERNAL_WT_SELF_END=0
PRIMER_INTERNAL_WT_SELF_END_TH=0
PRIMER_INTERNAL_WT_SEQ_QUAL=0
PRIMER_INTERNAL_WT_SIZE_GT=1
PRIMER_INTERNAL_WT_SIZE_LT=1
PRIMER_INTERNAL_WT_TM_GT=1
PRIMER_INTERNAL_WT_TM_LT=1
PRIMER_MAX_BOUND=110
PRIMER_MAX_END_STABILITY=100
PRIMER_MAX_GC=80
PRIMER_MAX_HAIRPIN_TH=47
PRIMER_MAX_LIBRARY_MISPRIMING=12
PRIMER_MAX_SELF_ANY=8
PRIMER_MAX_SELF_ANY_TH=47
PRIMER_MAX_SELF_END=3
PRIMER_MAX_SELF_END_TH=47
PRIMER_MAX_TEMPLATE_MISPRIMING=-100
PRIMER_MAX_TEMPLATE_MISPRIMING_TH=-100
PRIMER_MAX_TM=63
PRIMER_MIN_BOUND=-10
PRIMER_MIN_GC=20
PRIMER_MIN_TM=57
PRIMER_OPT_BOUND=97
PRIMER_OPT_TM=60
PRIMER_OUTSIDE_PENALTY=0
PRIMER_PAIR_MAX_COMPL_ANY=8
PRIMER_PAIR_MAX_COMPL_ANY_TH=47
PRIMER_PAIR_MAX_COMPL_END=3
PRIMER_PAIR_MAX_COMPL_END_TH=47
PRIMER_PAIR_MAX_DIFF_TM=100
PRIMER_PAIR_MAX_LIBRARY_MISPRIMING=24
PRIMER_PAIR_MAX_TEMPLATE_MISPRIMING=-100
PRIMER_PAIR_MAX_TEMPLATE_MISPRIMING_TH=-100
PRIMER_PAIR_WT_COMPL_ANY=0
PRIMER_PAIR_WT_COMPL_ANY_TH=0
PRIMER_PAIR_WT_COMPL_END=0
PRIMER_PAIR_WT_COMPL_END_TH=0
PRIMER_PAIR_WT_DIFF_TM=0
PRIMER_PAIR_WT_IO_PENALTY=0
PRIMER_PAIR_WT_LIBRARY_MISPRIMING=0
PRIMER_PAIR_WT_PRODUCT_SIZE_GT=0
PRIMER_PAIR_WT_PRODUCT_SIZE_LT=0
PRIMER_PAIR_WT_PRODUCT_TM_GT=0
PRIMER_PAIR_WT_PRODUCT_TM_LT=0
PRIMER_PAIR_WT_PR_PENALTY=1
PRIMER_PAIR_WT_TEMPLATE_MISPRIMING=0
PRIMER_PAIR_WT_TEMPLATE_MISPRIMING_TH=0
PRIMER_PRODUCT_MAX_TM=100000
PRIMER_PRODUCT_MIN_TM=-100000
PRIMER_SALT_DIVALENT=0
PRIMER_SALT_MONOVALENT=50
PRIMER_WT_BOUND_GT=0
PRIMER_WT_BOUND_LT=0
PRIMER_WT_END_QUAL=0
PRIMER_WT_END_STABILITY=0
PRIMER_WT_GC_PERCENT_GT=0
PRIMER_WT_GC_PERCENT_LT=0
PRIMER_WT_HAIRPIN_TH=0
PRIMER_WT_LIBRARY_MISPRIMING=0
PRIMER_WT_MASK_FAILURE_RATE=0
PRIMER_WT_NUM_NS=0
PRIMER_WT_POS_PENALTY=1
PRIMER_WT_SELF_ANY=0
PRIMER_WT_SELF_ANY_TH=0
PRIMER_WT_SELF_END=0
PRIMER_WT_SELF_END_TH=0
PRIMER_WT_SEQ_QUAL=0
PRIMER_WT_SIZE_GT=1
PRIMER_WT_SIZE_LT=1
PRIMER_WT_TEMPLATE_MISPRIMING=0
PRIMER_WT_TEMPLATE_MISPRIMING_TH=0
PRIMER_WT_TM_GT=1
PRIMER_WT_TM_LT=1
SEQUENCE_PRIMER=
SEQUENCE_INTERNAL_OLIGO=
SEQUENCE_PRIMER_REVCOMP=
SEQUENCE_OVERHANG_LEFT=
SEQUENCE_OVERHANG_RIGHT=
SEQUENCE_TARGET=
SEQUENCE_OVERLAP_JUNCTION_LIST=
SEQUENCE_INTERNAL_OVERLAP_JUNCTION_LIST=
SEQUENCE_EXCLUDED_REGION=
SEQUENCE_PRIMER_PAIR_OK_REGION_LIST=
SEQUENCE_INCLUDED_REGION=
SEQUENCE_INTERNAL_EXCLUDED_REGION=
SEQUENCE_START_CODON_SEQUENCE=ATG
PRIMER_MUST_MATCH_FIVE_PRIME=
PRIMER_MUST_MATCH_THREE_PRIME=
PRIMER_INTERNAL_MUST_MATCH_FIVE_PRIME=
PRIMER_INTERNAL_MUST_MATCH_THREE_PRIME=
PRIMER_PRODUCT_SIZE_RANGE=100-300
SEQUENCE_QUALITY=
PRIMER_TASK=generic
PRIMER_TM_FORMULA=0
PRIMER_SALT_CORRECTIONS=0
PRIMER_MISPRIMING_LIBRARY=
PRIMER_INTERNAL_MISHYB_LIBRARY=
=
181 changes: 181 additions & 0 deletions data/primer3/presets/RPA.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,181 @@
PRIMER_FIRST_BASE_INDEX=1
PRIMER_GC_CLAMP=0
PRIMER_INTERNAL_MAX_NS_ACCEPTED=0
PRIMER_INTERNAL_MAX_POLY_X=5
PRIMER_INTERNAL_MAX_SIZE=27
PRIMER_INTERNAL_MIN_3_PRIME_OVERLAP_OF_JUNCTION=3
PRIMER_INTERNAL_MIN_5_PRIME_OVERLAP_OF_JUNCTION=3
PRIMER_INTERNAL_MIN_QUALITY=0
PRIMER_INTERNAL_MIN_SIZE=18
PRIMER_INTERNAL_MIN_THREE_PRIME_DISTANCE=-1
PRIMER_INTERNAL_OPT_SIZE=20
PRIMER_LIBERAL_BASE=0
PRIMER_LIB_AMBIGUITY_CODES_CONSENSUS=1
PRIMER_LOWERCASE_MASKING=0
PRIMER_MAX_END_GC=5
PRIMER_MAX_NS_ACCEPTED=0
PRIMER_MAX_POLY_X=5
PRIMER_MAX_SIZE=35
PRIMER_MIN_3_PRIME_OVERLAP_OF_JUNCTION=4
PRIMER_MIN_5_PRIME_OVERLAP_OF_JUNCTION=7
PRIMER_MIN_END_QUALITY=0
PRIMER_MIN_LEFT_THREE_PRIME_DISTANCE=-1
PRIMER_MIN_QUALITY=0
PRIMER_MIN_RIGHT_THREE_PRIME_DISTANCE=-1
PRIMER_MIN_SIZE=30
PRIMER_NUM_RETURN=50
PRIMER_OPT_SIZE=33
PRIMER_PICK_ANYWAY=0
PRIMER_PICK_INTERNAL_OLIGO=0
PRIMER_PICK_LEFT_PRIMER=1
PRIMER_PICK_RIGHT_PRIMER=1
PRIMER_QUALITY_RANGE_MAX=100
PRIMER_QUALITY_RANGE_MIN=0
PRIMER_SECONDARY_STRUCTURE_ALIGNMENT=0
PRIMER_SEQUENCING_ACCURACY=20
PRIMER_SEQUENCING_INTERVAL=250
PRIMER_SEQUENCING_LEAD=50
PRIMER_SEQUENCING_SPACING=500
PRIMER_THERMODYNAMIC_OLIGO_ALIGNMENT=0
PRIMER_THERMODYNAMIC_TEMPLATE_ALIGNMENT=0
SEQUENCE_FORCE_LEFT_END=-1000000
SEQUENCE_FORCE_LEFT_START=-1000000
SEQUENCE_FORCE_RIGHT_END=-1000000
SEQUENCE_FORCE_RIGHT_START=-1000000
SEQUENCE_START_CODON_POSITION=-2000000
PRIMER_ANNEALING_TEMP=0
PRIMER_DMSO_CONC=0
PRIMER_DMSO_FACTOR=0.6
PRIMER_DNA_CONC=50
PRIMER_DNTP_CONC=0
PRIMER_FORMAMIDE_CONC=0
PRIMER_INSIDE_PENALTY=-1
PRIMER_INTERNAL_DMSO_CONC=0
PRIMER_INTERNAL_DMSO_FACTOR=0.6
PRIMER_INTERNAL_DNA_CONC=50
PRIMER_INTERNAL_DNTP_CONC=0
PRIMER_INTERNAL_FORMAMIDE_CONC=0
PRIMER_INTERNAL_MAX_BOUND=110
PRIMER_INTERNAL_MAX_GC=80
PRIMER_INTERNAL_MAX_HAIRPIN_TH=47
PRIMER_INTERNAL_MAX_LIBRARY_MISHYB=12
PRIMER_INTERNAL_MAX_SELF_ANY=12
PRIMER_INTERNAL_MAX_SELF_ANY_TH=47
PRIMER_INTERNAL_MAX_SELF_END=12
PRIMER_INTERNAL_MAX_SELF_END_TH=47
PRIMER_INTERNAL_MAX_TM=63
PRIMER_INTERNAL_MIN_BOUND=-10
PRIMER_INTERNAL_MIN_GC=20
PRIMER_INTERNAL_MIN_TM=57
PRIMER_INTERNAL_OPT_BOUND=97
PRIMER_INTERNAL_OPT_TM=60
PRIMER_INTERNAL_SALT_DIVALENT=0
PRIMER_INTERNAL_SALT_MONOVALENT=50
PRIMER_INTERNAL_WT_BOUND_GT=0
PRIMER_INTERNAL_WT_BOUND_LT=0
PRIMER_INTERNAL_WT_END_QUAL=0
PRIMER_INTERNAL_WT_GC_PERCENT_GT=0
PRIMER_INTERNAL_WT_GC_PERCENT_LT=0
PRIMER_INTERNAL_WT_HAIRPIN_TH=0
PRIMER_INTERNAL_WT_LIBRARY_MISHYB=0
PRIMER_INTERNAL_WT_NUM_NS=0
PRIMER_INTERNAL_WT_SELF_ANY=0
PRIMER_INTERNAL_WT_SELF_ANY_TH=0
PRIMER_INTERNAL_WT_SELF_END=0
PRIMER_INTERNAL_WT_SELF_END_TH=0
PRIMER_INTERNAL_WT_SEQ_QUAL=0
PRIMER_INTERNAL_WT_SIZE_GT=1
PRIMER_INTERNAL_WT_SIZE_LT=1
PRIMER_INTERNAL_WT_TM_GT=1
PRIMER_INTERNAL_WT_TM_LT=1
PRIMER_MAX_BOUND=110
PRIMER_MAX_END_STABILITY=100
PRIMER_MAX_GC=80
PRIMER_MAX_HAIRPIN_TH=47
PRIMER_MAX_LIBRARY_MISPRIMING=12
PRIMER_MAX_SELF_ANY=5
PRIMER_MAX_SELF_ANY_TH=47
PRIMER_MAX_SELF_END=3
PRIMER_MAX_SELF_END_TH=47
PRIMER_MAX_TEMPLATE_MISPRIMING=-100
PRIMER_MAX_TEMPLATE_MISPRIMING_TH=-100
PRIMER_MAX_TM=80
PRIMER_MIN_BOUND=-10
PRIMER_MIN_GC=20
PRIMER_MIN_TM=20
PRIMER_OPT_BOUND=97
PRIMER_OPT_TM=55
PRIMER_OUTSIDE_PENALTY=0
PRIMER_PAIR_MAX_COMPL_ANY=5
PRIMER_PAIR_MAX_COMPL_ANY_TH=47
PRIMER_PAIR_MAX_COMPL_END=3
PRIMER_PAIR_MAX_COMPL_END_TH=47
PRIMER_PAIR_MAX_DIFF_TM=100
PRIMER_PAIR_MAX_LIBRARY_MISPRIMING=24
PRIMER_PAIR_MAX_TEMPLATE_MISPRIMING=-100
PRIMER_PAIR_MAX_TEMPLATE_MISPRIMING_TH=-100
PRIMER_PAIR_WT_COMPL_ANY=0
PRIMER_PAIR_WT_COMPL_ANY_TH=0
PRIMER_PAIR_WT_COMPL_END=0
PRIMER_PAIR_WT_COMPL_END_TH=0
PRIMER_PAIR_WT_DIFF_TM=0
PRIMER_PAIR_WT_IO_PENALTY=0
PRIMER_PAIR_WT_LIBRARY_MISPRIMING=0
PRIMER_PAIR_WT_PRODUCT_SIZE_GT=0
PRIMER_PAIR_WT_PRODUCT_SIZE_LT=0
PRIMER_PAIR_WT_PRODUCT_TM_GT=0
PRIMER_PAIR_WT_PRODUCT_TM_LT=0
PRIMER_PAIR_WT_PR_PENALTY=1
PRIMER_PAIR_WT_TEMPLATE_MISPRIMING=0
PRIMER_PAIR_WT_TEMPLATE_MISPRIMING_TH=0
PRIMER_PRODUCT_MAX_TM=100000
PRIMER_PRODUCT_MIN_TM=-100000
PRIMER_SALT_DIVALENT=0
PRIMER_SALT_MONOVALENT=50
PRIMER_WT_BOUND_GT=0
PRIMER_WT_BOUND_LT=0
PRIMER_WT_END_QUAL=0
PRIMER_WT_END_STABILITY=0
PRIMER_WT_GC_PERCENT_GT=0
PRIMER_WT_GC_PERCENT_LT=0
PRIMER_WT_HAIRPIN_TH=0
PRIMER_WT_LIBRARY_MISPRIMING=0
PRIMER_WT_MASK_FAILURE_RATE=0
PRIMER_WT_NUM_NS=0
PRIMER_WT_POS_PENALTY=1
PRIMER_WT_SELF_ANY=0
PRIMER_WT_SELF_ANY_TH=0
PRIMER_WT_SELF_END=0
PRIMER_WT_SELF_END_TH=0
PRIMER_WT_SEQ_QUAL=0
PRIMER_WT_SIZE_GT=1
PRIMER_WT_SIZE_LT=1
PRIMER_WT_TEMPLATE_MISPRIMING=0
PRIMER_WT_TEMPLATE_MISPRIMING_TH=0
PRIMER_WT_TM_GT=1
PRIMER_WT_TM_LT=1
SEQUENCE_PRIMER=
SEQUENCE_INTERNAL_OLIGO=
SEQUENCE_PRIMER_REVCOMP=
SEQUENCE_OVERHANG_LEFT=
SEQUENCE_OVERHANG_RIGHT=
SEQUENCE_TARGET=
SEQUENCE_OVERLAP_JUNCTION_LIST=
SEQUENCE_INTERNAL_OVERLAP_JUNCTION_LIST=
SEQUENCE_EXCLUDED_REGION=
SEQUENCE_PRIMER_PAIR_OK_REGION_LIST=
SEQUENCE_INCLUDED_REGION=
SEQUENCE_INTERNAL_EXCLUDED_REGION=
SEQUENCE_START_CODON_SEQUENCE=ATG
PRIMER_MUST_MATCH_FIVE_PRIME=
PRIMER_MUST_MATCH_THREE_PRIME=
PRIMER_INTERNAL_MUST_MATCH_FIVE_PRIME=
PRIMER_INTERNAL_MUST_MATCH_THREE_PRIME=
PRIMER_PRODUCT_SIZE_RANGE=200-500
SEQUENCE_QUALITY=
PRIMER_TASK=generic
PRIMER_TM_FORMULA=0
PRIMER_SALT_CORRECTIONS=0
PRIMER_MISPRIMING_LIBRARY=
PRIMER_INTERNAL_MISHYB_LIBRARY=
=
3 changes: 3 additions & 0 deletions etc/script/linux/release-bundle.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -867,6 +867,9 @@ data/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm
data/primer3
data/primer3/drosophila.w.transposons.txt
data/primer3/humrep_and_simple.txt
data/primer3/presets
data/primer3/presets/Default.txt
data/primer3/presets/RPA.txt
data/primer3/rodent_ref.txt
data/primer3/rodrep_and_simple.txt
data/query_samples
Expand Down
3 changes: 3 additions & 0 deletions etc/script/mac/release-bundle.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -963,6 +963,9 @@ Unipro UGENE.app/Contents/MacOS/data/position_weight_matrix/UniPROBE/all_uniprob
Unipro UGENE.app/Contents/MacOS/data/primer3
Unipro UGENE.app/Contents/MacOS/data/primer3/drosophila.w.transposons.txt
Unipro UGENE.app/Contents/MacOS/data/primer3/humrep_and_simple.txt
Unipro UGENE.app/Contents/MacOS/data/primer3/presets
Unipro UGENE.app/Contents/MacOS/data/primer3/presets/Default.txt
Unipro UGENE.app/Contents/MacOS/data/primer3/presets/RPA.txt
Unipro UGENE.app/Contents/MacOS/data/primer3/rodent_ref.txt
Unipro UGENE.app/Contents/MacOS/data/primer3/rodrep_and_simple.txt
Unipro UGENE.app/Contents/MacOS/data/query_samples
Expand Down
3 changes: 3 additions & 0 deletions etc/script/windows/release-bundle.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -906,6 +906,9 @@ data/position_weight_matrix/UniPROBE/all_uniprobe.csv
data/primer3
data/primer3/drosophila.w.transposons.txt
data/primer3/humrep_and_simple.txt
data/primer3/presets
data/primer3/presets/Default.txt
data/primer3/presets/RPA.txt
data/primer3/rodent_ref.txt
data/primer3/rodrep_and_simple.txt
data/query_samples
Expand Down