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Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

Pinned

  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 58 29

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 24 5

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 17 6

Repositories

42 results for all repositories written in Python sorted by last updated
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Showing 10 of 42 repositories
  • IN-BIOSx000 Public Forked from arvindsundaram/IN-BIOSx000

    Course material for the IN-BIOSx000 course "Sequencing technologies, data analysis, and applications" at the University of Oslo

    Python 0 CC0-1.0 10 0 0 Updated Jun 17, 2024
  • dagsim Public

    A framework and specification language for simulating data based on graphical models

    Python 18 AGPL-3.0 3 1 0 Updated Jun 14, 2024
  • fdr_hacking Public
    Python 2 MIT 0 0 2 Updated Jun 13, 2024
  • immuneml_tools Public

    Galaxy tools using the immuneML conda package.

    Python 1 0 0 0 Updated Jun 12, 2024
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 58 AGPL-3.0 29 0 1 Updated Jun 12, 2024
  • StarSignDNA Public
    Python 1 MIT 0 0 0 Updated Jun 11, 2024
  • ligo Public

    LIgO is a tool for simulation of adaptive immune receptors and repertoires.

    Python 0 AGPL-3.0 1 0 0 Updated May 27, 2024
  • SimCal Public

    Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

    Python 0 Apache-2.0 0 0 0 Updated Mar 22, 2024
  • SynthPwr Public

    Synthetic framework for stress testing the parameters and statistical power of epigenetic power calculators

    Python 1 MIT 0 0 0 Updated Dec 7, 2023
  • VirMake Public

    VirMake is a Snakemake based pipeline that offers viral metagenic data analysis on paired-end data. It offers taxonomic and functional annotation, supports offline running and support for HPC cluster execution. It is made for Linux based systems and has been tested on SLURM cluster execution.

    Python 0 GPL-3.0 1 0 0 Updated Oct 3, 2023
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