EX-212: convert md to rst

umich-brcf-bioinf · Apr 8, 2015 · 94a6945 · 94a6945
1 parent fdd2624
commit 94a6945
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/README.rst b/README.rst
@@ -31,21 +31,21 @@ Usage
 
 *Subcommands*
 
-:translate
+translate
    Accepts a directory of VCF results (including VarScan high confidence 
    files). Creates a new directory of VCFs, adding Jacquard-specific FORMAT 
    tags for each VCF record.
-:filter_hc_somatic
+filter_hc_somatic
    Accepts a directory of Jacquard-tagged VCF results from one or more callers
    and creates a new directory of VCFs, where rows have been filtered to 
    contain only positions that were called as high-confidence somatic in 
    any VCF.
-:merge
+merge
    Accepts a directory of VCFs and returns a single merged VCF file.
-:summarize
+summarize
    Accepts a Jacquard-merged VCF file and creates a new VCF file, adding 
    summary fields/tags.
-:expand
+expand
    Transforms VCF file into tab-separated text file expanding INFO fields and 
    FORMAT tags into distinct columns.