ex-165 (jebene) - small change

umich-brcf-bioinf · Mar 16, 2015 · c0573c6 · c0573c6
1 parent c5eb52e
commit c0573c6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/jacquard/variant_callers/varscan.py b/jacquard/variant_callers/varscan.py
@@ -326,7 +326,7 @@ def _create_vcf_readers(pair_tuples):
             if vcf_file_reader and hc_file_reader:
                 vcf_reader = _VarscanVcfReader(vcf.VcfReader(vcf_file_reader),
                                                hc_file_reader)
-            elif vcf_file_reader:
+            elif vcf_file_reader and not hc_file_reader:
                 vcf_reader = _VarscanVcfReader(vcf.VcfReader(vcf_file_reader))
             vcf_readers.append(vcf_reader)