Add UWGeo tests

.github/workflows/CI.yml

@@ -230,6 +230,7 @@ jobs:
         run: |
           pip install pytest
           python3 -m pytest -vvv docs/pytests
+          python3 -m pytest -vvv docs/test/UWGeodynamics
 
   conda_build:
       name: Conda Build (Python ${{matrix.python-version}} ${{ matrix.os }})
@@ -299,28 +300,28 @@ jobs:
   #         pip install twine
   #         python -m twine upload dist/*
 
-  manylinux-wheels:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python
-      uses: actions/setup-python@v2
-      with:
-        python-version: 3.8
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install twine
-    - name: Build manylinux Python wheels
-      uses: RalfG/python-wheels-manylinux-build@v0.4.2-manylinux2014_x86_64
-      with:
-        system-packages: 'cmake ninja-build'
-        python-versions: 'cp37-cp37m cp38-cp38 cp39-cp39 cp310-cp310'
-        build-requirements: 'setuptools numpy'
-    - name: Publish wheels to PyPI
-      if: github.event_name == 'release'
-      env:
-        TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }}
-        TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }}
-      run: |
-        twine upload dist/*-manylinux*.whl
+  # manylinux-wheels:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #   - uses: actions/checkout@v2
+  #   - name: Set up Python
+  #     uses: actions/setup-python@v2
+  #     with:
+  #       python-version: 3.8
+  #   - name: Install dependencies
+  #     run: |
+  #       python -m pip install --upgrade pip
+  #       pip install twine
+  #   - name: Build manylinux Python wheels
+  #     uses: RalfG/python-wheels-manylinux-build@v0.4.2-manylinux2014_x86_64
+  #     with:
+  #       system-packages: 'cmake ninja-build'
+  #       python-versions: 'cp37-cp37m cp38-cp38 cp39-cp39 cp310-cp310'
+  #       build-requirements: 'setuptools numpy'
+  #   - name: Publish wheels to PyPI
+  #     if: github.event_name == 'release'
+  #     env:
+  #       TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }}
+  #       TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }}
+  #     run: |
+  #       twine upload dist/*-manylinux*.whl

docs/test/UWGeodynamics/test_benchmarks.py

@@ -5,7 +5,7 @@
 import glob
 import ntpath
 
-scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/benchmarks/*.ipynb"))]
+scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/UWGeodynamics/benchmarks/*.ipynb"))]
 
 @pytest.mark.parametrize('script', scripts)
 def test_script_execution(script):

docs/test/UWGeodynamics/test_examples.py

@@ -5,7 +5,7 @@
 import glob
 import ntpath
 
-scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/examples/*.ipynb"))]
+scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/UWGeodynamics/examples/*.ipynb"))]
 
 @pytest.mark.parametrize('script', scripts)
 def test_script_execution(script):

docs/test/UWGeodynamics/test_tutorials.py

@@ -5,7 +5,7 @@
 import glob
 import ntpath
 
-scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/tutorials/*.ipynb")) if "Badlands" not in path]
+scripts = [pytest.param(path, id=ntpath.basename(path)) for path in sorted(glob.glob("docs/UWGeodynamics/tutorials/*.ipynb")) if "Badlands" not in path]
 
 @pytest.mark.parametrize('script', scripts)
 def test_script_execution(script):

docs/test/UWGeodynamics/utils.py

@@ -2,6 +2,7 @@
 from shutil import copyfile
 import os
 import json
+import sys
 
 
 def _check_setup_only(nb):
@@ -31,7 +32,7 @@ def _notebook_run(script, check_setup_only=True):
 
     pyfile = outpath.split(".")[0] + ".py"
     os.remove(outpath)
-    args = ["python", pyfile]
+    args = [sys.executable, pyfile]
     subprocess.check_call(args)
     os.remove(pyfile)