Adding readme for pyspark_sql enhancements #1880
Workflow file for this run
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name: CI Tests | |
on: | |
push: | |
branches: | |
- main | |
- dev | |
- bugfix | |
- "release/*" | |
pull_request: | |
branches: | |
- main | |
- dev | |
- bugfix | |
- "release/*" | |
env: | |
DEFAULT_PYTHON: 3.8 | |
CI: "true" | |
# Increase this value to reset cache if environment.yml has not changed | |
CACHE_VERSION: 6 | |
concurrency: | |
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
cancel-in-progress: true | |
jobs: | |
lint: | |
name: Linters (${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/cache@v2 | |
with: | |
path: ~/.cache/pip # ubuntu location | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install dependencies | |
run: | | |
python -m pip install nox pre_commit \ | |
mypy==0.982 \ | |
types-click \ | |
types-pyyaml \ | |
types-pkg_resources \ | |
types-requests \ | |
types-pytz | |
- name: Pip info | |
run: python -m pip list | |
- name: Check requirements | |
run: > | |
nox | |
-db virtualenv -r | |
--non-interactive | |
--python ${{ matrix.python-version }} | |
--session requirements-${{ matrix.python-version }} | |
- name: Sort Imports | |
run: pre-commit run isort --all-files | |
- name: Black | |
if: always() | |
run: pre-commit run black --all-files | |
- name: Pylint | |
if: always() | |
run: pre-commit run pylint --all-files | |
- name: Mypy Type Checking | |
if: always() | |
run: pre-commit run mypy --all-files | |
tests: | |
name: > | |
CI Tests (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: pwsh | |
env: | |
PYTHONUTF8: 1 | |
NOX_FLAGS: -v --no-install --no-venv --non-interactive | |
PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
strategy: | |
fail-fast: true | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
pandas-version: ["1.3.0", "1.5.2", "2.0.1"] | |
exclude: | |
- python-version: "3.7" | |
pandas-version: "2.0.1" | |
- python-version: "3.7" | |
pandas-version: "1.5.2" | |
- python-version: "3.10" | |
pandas-version: "1.3.0" | |
- python-version: "3.11" | |
pandas-version: "1.3.0" | |
include: | |
- os: ubuntu-latest | |
pip-cache: ~/.cache/pip | |
- os: macos-latest | |
pip-cache: ~/Library/Caches/pip | |
- os: windows-latest | |
pip-cache: ~/AppData/Local/pip/Cache | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Cache conda | |
uses: actions/cache@v2 | |
env: | |
# Increase this value to reset cache if etc/environment.yml has not changed | |
CACHE_NUMBER: 1 | |
with: | |
path: ~/conda_pkgs_dir | |
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
id: cache | |
- name: Cache pip | |
uses: actions/cache@v2 | |
with: | |
path: ${{ matrix.pip-cache }} | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
miniforge-version: latest | |
miniforge-variant: Mambaforge | |
use-mamba: true | |
activate-environment: pandera-dev | |
channels: conda-forge | |
channel-priority: true | |
use-only-tar-bz2: true | |
# ray currently cannot be installed on python 3.11 | |
- name: Remove Ray from Deps | |
if: ${{ matrix.python-version == '3.11' && matrix.os != 'macos-latest' }} | |
run: sed -i '/ray/d' environment.yml | |
- name: Remove Ray from Deps | |
if: ${{ matrix.python-version == '3.11' && matrix.os == 'macos-latest' }} | |
run: sed -i .bak '/ray/d' environment.yml | |
# need to install pandas via pip: conda installation is on the fritz | |
- name: Install Conda Deps [pandas 2] | |
if: ${{ matrix.pandas-version == '2.0.1' }} | |
run: | | |
mamba install -c conda-forge asv pandas geopandas bokeh | |
mamba env update -n pandera-dev -f environment.yml | |
pip install pandas==${{ matrix.pandas-version }} | |
pip install --user dask>=2023.3.2 | |
- name: Install Conda Deps | |
if: ${{ matrix.pandas-version != '2.0.1' }} | |
run: | | |
mamba install -c conda-forge asv pandas==${{ matrix.pandas-version }} geopandas bokeh | |
mamba env update -n pandera-dev -f environment.yml | |
- run: | | |
conda info | |
conda list | |
conda config --show-sources | |
conda config --show | |
printenv | sort | |
- name: Unit Tests - Core | |
run: pytest tests/core ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Hypotheses | |
run: pytest tests/hypotheses ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - IO | |
run: pytest tests/io ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Mypy | |
if: ${{ matrix.python-version != '3.7' }} | |
run: pytest -v tests/mypy ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Strategies | |
run: pytest tests/strategies ${{ env.PYTEST_FLAGS }} ${{ env.HYPOTHESIS_FLAGS }} | |
- name: Unit Tests - FastAPI | |
run: pytest tests/fastapi ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - GeoPandas | |
run: pytest tests/geopandas ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Dask | |
if: ${{ matrix.pandas-version != '2.0.1' }} | |
run: pytest tests/dask ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Pyspark | |
if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.1' }} | |
run: pytest tests/pyspark ${{ env.PYTEST_FLAGS }} | |
- name: Unit Tests - Modin-Dask | |
if: ${{ !contains(fromJson('["3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.1' }} | |
run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
env: | |
CI_MODIN_ENGINES: dask | |
- name: Unit Tests - Modin-Ray | |
# ray CI issues with the following: | |
# - windows, python 3.10 | |
# - mac, python 3.7 | |
# Tracking issue: https://github.com/modin-project/modin/issues/5466 | |
if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) && matrix.pandas-version != '2.0.1' }} | |
run: pytest tests/modin ${{ env.PYTEST_FLAGS }} | |
env: | |
CI_MODIN_ENGINES: ray | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
- name: Check Docstrings | |
if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) }} | |
run: nox ${{ env.NOX_FLAGS }} --session doctests | |
- name: Check Docs | |
if: ${{ matrix.os != 'windows-latest' && !contains(fromJson('["3.7", "3.10", "3.11"]'), matrix.python-version) }} | |
run: nox ${{ env.NOX_FLAGS }} --session docs |