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Add pept2lca #177

Merged
merged 16 commits into from
Aug 1, 2024
Merged

Add pept2lca #177

merged 16 commits into from
Aug 1, 2024

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bmesuere
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@bmesuere bmesuere commented Jul 2, 2024 •
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This PR implements the infrastructure for unipept api commands. It does this by implementing the pept2lca subcommand.

To be done in a later PR:

  • other subcommands
  • json and xml formatters
  • selecting fields
  • fasta support

@bmesuere bmesuere changed the base branch from main to next July 2, 2024 15:14
@bmesuere bmesuere marked this pull request as ready for review July 31, 2024 13:10
@bmesuere bmesuere requested a review from pverscha July 31, 2024 13:10
@bmesuere bmesuere merged commit 0e377b2 into next Aug 1, 2024
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@bmesuere bmesuere deleted the next-unipept-1 branch August 1, 2024 12:01
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@pverscha pverscha pverscha approved these changes

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@bmesuere @pverscha