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urmi-21 · Feb 19, 2020 · 9fd0f65 · 9fd0f65
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 See the :ref:`Installation notes <installation>` for details.
 
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+Examples and Case-Studies
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+Example usage and case-studies with real data is provided at `GitHub <https://github.com/urmi-21/pyrpipe/tree/master/examples(case-studies)>`_.
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+- Arabidopsis thaliana transcript assembly using pyrpipe checkpoints. `Link <https://github.com/urmi-21/pyrpipe/tree/master/examples(case-studies)/Athaliana_transcript_assembly>`_.
+- Prediction of long non-coding RNAs (lncRNAs) in Zea mays by supplementing pyrpipe with a third-party tool. `Link <https://github.com/urmi-21/pyrpipe/tree/master/examples(case-studies)/Maize_lncRNA_prediction>`_.
+- Integrating pyrpipe scripts within a workflow management system (Snakemake). `Link <https://github.com/urmi-21/pyrpipe/tree/master/examples(case-studies)/Human_annotation_snakemake>`_.
+- Guide for integrating third-party tools into pyrpipe. `Link <https://github.com/urmi-21/pyrpipe/blob/master/examples(case-studies)/Integrating%20third-party%20tools.ipynb>`_.
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 Philosophy
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