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1. SingleCellNotes SingleCellNotes Public

   Forked from pdmoerland/SingleCellNotes

   Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis

2. seurat seurat Public

   Forked from satijalab/seurat

   R toolkit for single cell genomics

   R

3. SPOTlight SPOTlight Public

   Forked from MarcElosua/SPOTlight

   Spatial Transcriptomics Capture Location Deconvolution

   R

4. spacexr spacexr Public

   Forked from dmcable/spacexr

   Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

   HTML

5. sctransform sctransform Public

   Forked from satijalab/sctransform

   R package for modeling single cell UMI expression data using regularized negative binomial regression

   R

6. openproblems openproblems Public

   Forked from openproblems-bio/openproblems

   Formalizing and benchmarking open problems in single-cell genomics

   Jupyter Notebook