UW-Madison LOCI

Repositories

• website-tests

  Automated tests for LOCI websites
  Perl Unlicense 0 0 0 0 Updated Aug 7, 2020

• optogensim
  MATLAB BSD-2-Clause 1 0 0 0 Updated Aug 7, 2020

• curvelets

  Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)
  MATLAB 16 10 3 0 Updated Aug 2, 2020

• shg_he_registration

  Intensity-based registration of bright-field and second-harmonic generation images of histopathology tissue sections
  MATLAB 0 0 0 0 Updated Aug 1, 2020

• he_shg_synth_workflow

  Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis
  Python 1 0 0 0 Updated Aug 1, 2020

• SSFC

  Spectrally-split Swept Field Confocal Microscope Project
  MATLAB GPL-3.0 0 0 0 0 Updated Jul 8, 2020

• demo_wsi_superres

  Single image super resolution for Whole slide Imaging
  Python 0 1 0 0 Updated Apr 10, 2020

• adaptive-coloc

  Adaptive colocalization algorithms
  Java 0 1 0 0 Updated Mar 17, 2020

• RKColocal

  Forked from lakerwsl/RKColocal

  This is an R package for colocalization analysis.
  HTML 2 1 0 0 Updated Mar 17, 2020

• Notebooks
  Jupyter Notebook 2 2 0 0 Updated Feb 4, 2020

• multiscale

  Modules for multiscale imaging at LOCI
  Python BSD-3-Clause 0 1 0 0 Updated Dec 13, 2019

• US-Microscopy-fiducial-phantom

  An example of image registration between Ultrasound and multiphoton microscopy, as well as analyzing the robustness of the transform.
  Jupyter Notebook 0 0 0 0 Updated Dec 6, 2019

• loci-javadoc

  An aggregator for LOCI Javadocs
  Shell 0 0 0 0 Updated Oct 19, 2019

• SETI

  Sequential Erosion Tissue Imaging (SETI) Microscope Project
  MATLAB GPL-3.0 0 1 0 0 Updated Oct 11, 2019

• polarimetry

  Scripts for mueller polarimetry collaboration with U Toronto
  Jupyter Notebook 0 1 0 0 Updated Sep 13, 2019

• wormclassroom Archived

  [RETIRED] WormClassroom web site
  HTML 0 0 0 0 Updated Aug 26, 2019

• syntheticfibergenerator

  generate synthetic fiber networks for algorithm validation and machine learning
  Java BSD-2-Clause 0 1 0 0 Updated Aug 19, 2019

• tickets

  Archived static HTML version of legacy LOCI Software Trac tickets
  HTML 0 0 0 0 Updated Jul 17, 2019

• visbio-imagej

  ImageJ plugins for 3D visualization using the VisAD toolkit
  Java 0 1 0 0 Updated May 7, 2019

• visbio

  A multi-purpose biological analysis tool
  Java GPL-2.0 1 4 28 0 Updated May 7, 2019

• slim-plotter

  A tool for visualization of spectral lifetime data
  Java GPL-2.0 0 1 17 0 Updated May 7, 2019

• misc-plugins

  Miscellaneous ImageJ plugins
  Java Apache-2.0 1 2 0 0 Updated May 7, 2019

• loci-utils

  Miscellaneous utilities
  Java 0 2 0 0 Updated May 7, 2019

• github-backup-java

  Backs up all GitHub-stored information about a repository to a dedicated branch.
  Java 0 5 1 0 Updated May 7, 2019

• coding-club

  Lecture notes and materials from LOCI Coding Club programmer meetings.
  Jupyter Notebook 0 1 0 0 Updated May 15, 2018

• SpectralMapping
  M 0 0 0 0 Updated Jan 9, 2018

• SpectralAnalysis

  Code for spectral separation for Fiber based spectral FLIM project

  matlab spectral-analysis lifetime fluorescence-microscopy-imaging flim
  MATLAB 0 0 0 0 Updated Jan 2, 2018

• prototype.wisc.edu
  CSS 0 0 0 0 Updated Oct 25, 2017

• wiscscan-java

  Java code for use as a library from WiscScan
  Java Apache-2.0 1 1 0 0 Updated Oct 5, 2017

• wid-3dniche

  Support code for the 3D Discovery Niche at the Wisconsin Institutes for Discovery
  Java GPL-2.0 0 0 0 0 Updated Oct 5, 2017