UW-Madison LOCI

Scripts for the Verasonics Ultrasound machine

This repository is Michael Pinker's set of python modules for image manipulation.

An aggregator for LOCI Javadocs

A multi-purpose biological analysis tool

ImageJ plugins for 3D visualization using the VisAD toolkit

SETI related scripts.

Curvelet-Based Alignment Analysis (CurveAlign and CurvePrep)

Scripts for mueller polarimetry collaboration with U Toronto

Lecture notes and materials from LOCI Coding Club programmer meetings.

WormClassroom web site

Code for spectral separation for Fiber based spectral FLIM project

Java code for use as a library from WiscScan

Support code for the 3D Discovery Niche at the Wisconsin Institutes for Discovery

ImageJ plugin for listening to your images

A tool for visualization of spectral lifetime data

Aperio and Ventana slide scanner importer plugin for FIJI/ImageJ, to be used for WiscScan XYZ grid generation.

Command line tool to inject OME-XML into Prairie TIFF files

OME-XML library extension for document versioning

Simple VisAD-based tool for visualizing multispectral images

Miscellaneous ImageJ plugins

Miscellaneous utilities

LOCI's Checkstyle extensions, for checking source code style.

A library for communicating between a Java Virtual Machine and other programs (e.g., C++ applications) via sockets.

Jar2lib tool for generating C++ proxy classes for a Java library

Cron job for WiscScan/UW-Forward integration

Server application for flow cytometry with WiscScan

Collaborative project with Exploratorium on real-time identifying and tracking fish samples under microscope