Skip to content

Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions

License

Notifications You must be signed in to change notification settings

uw-loci/MultivariateAnalysis_FLIM

Repository files navigation

Multi-variate Analysis for FLIM

Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions Main code is run through "streamlinedversion.m." Requries text file input with headers: ImageFile, KIValue, KIConcen, ManualCFDClass, FluorescentDye, Day, ROI, LaserPower, BinNumber, CollectionTime. Not all columns must contain information.

Results

  • Large CV is associated with long-lifetime FLIM data

image

To Run Code (20240320)

  • Download python code "crlb.py" written by Christoph Thiele (2021)
  • has been edited from the original repository (https://github.com/thielec/CRLB_FL-SMLM/blob/main/crlb.py) to include a call to the tau function
  • Download and run matlab code "plot_dye_crlb_cv.m" to generate plot
  • specify any folders or python environments - mpmath is required to run the python code
  • specify parameters to evaluate crlb (see python code for details)
  • load experimental data (mean lifetime and CV of values)

About

Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published