build(deps): bump the noodles group with 6 updates #436
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
![dependabot[bot]](https://avatars.githubusercontent.com/in/29110?s=60&v=4){kind=small}
Bumps the noodles group with 6 updates: | Package | From | To | | --- | --- | --- | | [noodles-bgzf](https://github.com/zaeleus/noodles) | `0.26.0` | `0.28.0` | | [noodles-csi](https://github.com/zaeleus/noodles) | `0.30.0` | `0.32.0` | | [noodles-fasta](https://github.com/zaeleus/noodles) | `0.33.0` | `0.35.0` | | [noodles-tabix](https://github.com/zaeleus/noodles) | `0.36.0` | `0.38.0` | | [noodles-vcf](https://github.com/zaeleus/noodles) | `0.49.0` | `0.53.0` | | [seqrepo](https://github.com/varfish-org/seqrepo-rs) | `0.10.0` | `0.10.1` | Updates `noodles-bgzf` from 0.26.0 to 0.28.0 - [Commits](zaeleus/noodles@noodles-bgzf-0.26.0...noodles-bgzf-0.28.0) Updates `noodles-csi` from 0.30.0 to 0.32.0 - [Commits](zaeleus/noodles@noodles-csi-0.30.0...noodles-csi-0.32.0) Updates `noodles-fasta` from 0.33.0 to 0.35.0 - [Commits](zaeleus/noodles@noodles-fasta-0.33.0...noodles-fasta-0.35.0) Updates `noodles-tabix` from 0.36.0 to 0.38.0 - [Commits](zaeleus/noodles@noodles-tabix-0.36.0...noodles-tabix-0.38.0) Updates `noodles-vcf` from 0.49.0 to 0.53.0 - [Commits](zaeleus/noodles@noodles-vcf-0.49.0...noodles-vcf-0.53.0) Updates `seqrepo` from 0.10.0 to 0.10.1 - [Release notes](https://github.com/varfish-org/seqrepo-rs/releases) - [Changelog](https://github.com/varfish-org/seqrepo-rs/blob/main/CHANGELOG.md) - [Commits](varfish-org/seqrepo-rs@v0.10.0...v0.10.1) --- updated-dependencies: - dependency-name: noodles-bgzf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-csi dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-fasta dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-tabix dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-vcf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: seqrepo dependency-type: direct:production update-type: version-update:semver-patch dependency-group: noodles ... Signed-off-by: dependabot[bot] <support@github.com>
dependabot
bot
added
dependencies
|
Superseded by #439. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Bumps the noodles group with 6 updates:
0.26.00.28.00.30.00.32.00.33.00.35.00.36.00.38.00.49.00.53.00.10.00.10.1Updates
noodles-bgzffrom 0.26.0 to 0.28.0Commits
4f72542Bump versions for noodles 0.67.059d8097sam/io/reader: Add example for Reader::recordsc3f9878sam/io/writer/header/record/value/map: Add value validation3b3e750bam/io/reader/record: Disallow partial block sizesda145c6bgzf/async/block_codec: Allow final frame to be incompletedc5919aBump versions for noodles 0.66.051a824fbam/record/data/field/value/array/values: Fix value count calculationb194d59bgzf/writer: Fix the default visibility of CompressionLevelImple9b4101htsget: Update to base64 0.22.0f80ac45bgzf/multithreaded_writer: Add builderUpdates
noodles-csifrom 0.30.0 to 0.32.0Commits
4f72542Bump versions for noodles 0.67.059d8097sam/io/reader: Add example for Reader::recordsc3f9878sam/io/writer/header/record/value/map: Add value validation3b3e750bam/io/reader/record: Disallow partial block sizesda145c6bgzf/async/block_codec: Allow final frame to be incompletedc5919aBump versions for noodles 0.66.051a824fbam/record/data/field/value/array/values: Fix value count calculationb194d59bgzf/writer: Fix the default visibility of CompressionLevelImple9b4101htsget: Update to base64 0.22.0f80ac45bgzf/multithreaded_writer: Add builderUpdates
noodles-fastafrom 0.33.0 to 0.35.0Commits
4f72542Bump versions for noodles 0.67.059d8097sam/io/reader: Add example for Reader::recordsc3f9878sam/io/writer/header/record/value/map: Add value validation3b3e750bam/io/reader/record: Disallow partial block sizesda145c6bgzf/async/block_codec: Allow final frame to be incompletedc5919aBump versions for noodles 0.66.051a824fbam/record/data/field/value/array/values: Fix value count calculationb194d59bgzf/writer: Fix the default visibility of CompressionLevelImple9b4101htsget: Update to base64 0.22.0f80ac45bgzf/multithreaded_writer: Add builderUpdates
noodles-tabixfrom 0.36.0 to 0.38.0Commits
4f72542Bump versions for noodles 0.67.059d8097sam/io/reader: Add example for Reader::recordsc3f9878sam/io/writer/header/record/value/map: Add value validation3b3e750bam/io/reader/record: Disallow partial block sizesda145c6bgzf/async/block_codec: Allow final frame to be incompletedc5919aBump versions for noodles 0.66.051a824fbam/record/data/field/value/array/values: Fix value count calculationb194d59bgzf/writer: Fix the default visibility of CompressionLevelImple9b4101htsget: Update to base64 0.22.0f80ac45bgzf/multithreaded_writer: Add builderUpdates
noodles-vcffrom 0.49.0 to 0.53.0Commits
28a3207Bump versions for noodles 0.69.0559dbdevcf/indexer: Use format records5c649fevcf/variant/record/samples: Add description1980e14bcf/io/reader/record/tests: Use samples series value buffer conversione62b880bcf/io/reader/record: Extract samples length readerf72bddabcf/io/reader/record: Disallow partial site lengths2a8deb9vcf/changelog: Update entry55f9b27vcf/io/writer/record/samples/sample/value/string: Percent-encode special char...f1515c0vcf/io/writer/record: Add percent-encoded value writer053b992vcf/io/writer/record/samples/sample/value: Move string writer to a moduleUpdates
seqrepofrom 0.10.0 to 0.10.1Release notes
Sourced from seqrepo's releases.
Changelog
Sourced from seqrepo's changelog.
Commits
aada2fechore(main): release 0.10.1 (#101)6d6c1e2build(deps): bump the noodles group with 1 update (#97)1e0974cbuild(deps): update rusqlite requirement from 0.30 to 0.31 (#96)4b6e531build(deps): bump actions/add-to-project from 0.5.0 to 0.6.0 (#98)19eb0d6fix: use column for seqid alias query (#100)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
@dependabot rebase.Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR:
@dependabot rebasewill rebase this PR@dependabot recreatewill recreate this PR, overwriting any edits that have been made to it@dependabot mergewill merge this PR after your CI passes on it@dependabot squash and mergewill squash and merge this PR after your CI passes on it@dependabot cancel mergewill cancel a previously requested merge and block automerging@dependabot reopenwill reopen this PR if it is closed@dependabot closewill close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually@dependabot show <dependency name> ignore conditionswill show all of the ignore conditions of the specified dependency@dependabot ignore <dependency name> major versionwill close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)@dependabot ignore <dependency name> minor versionwill close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)@dependabot ignore <dependency name>will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)@dependabot unignore <dependency name>will remove all of the ignore conditions of the specified dependency@dependabot unignore <dependency name> <ignore condition>will remove the ignore condition of the specified dependency and ignore conditions