removing ancestral state reconstruction from LEISR

veg · May 16, 2018 · 87ffd09 · 87ffd09
1 parent 53bb388
commit 87ffd09
Showing 1 changed file with 7 additions and 5 deletions.
diff --git a/res/TemplateBatchFiles/LEISR.bf b/res/TemplateBatchFiles/LEISR.bf
@@ -145,11 +145,13 @@ leisr.alignment_wide_MLES = estimators.FitSingleModel_Ext (
                                                           None,
                                                           {terms.run_options.retain_lf_object: TRUE});
 
-/* reconstruct ancestral states */
+/* reconstruct ancestral states - */
 
-leisr.ancestral_data = ancestral.build (leisr.alignment_wide_MLES[terms.likelihood_function], 0, FALSE);
-console.log (leisr.ancestral_data);                                                   
-return 0;
+// SW20180516 - NOT YET SUPPORTED
+
+//leisr.ancestral_data = ancestral.build (leisr.alignment_wide_MLES[terms.likelihood_function], 0, FALSE);
+//console.log (leisr.ancestral_data);                                                   
+//return 0;
 
 ConstructCategoryMatrix (leisr.site_level_log_likelihoods, ^(leisr.alignment_wide_MLES[terms.likelihood_function]), SITE_LOG_LIKELIHOODS);
 DeleteObject (^(leisr.alignment_wide_MLES[terms.likelihood_function]));
@@ -479,4 +481,4 @@ lfunction leisr.store_results (node, result, arguments) {
 
 lfunction leisr.getIC(logl, params, samples) {
     return -2 * logl + 2 * samples / (samples - params - 1) * params;
-}
+}