2.3.7

Notable Changes

• [#696] Five new amino acid models (Stephanie Spielman)

  • "mtMAM" - "Empirical model of protein evolution for mammalian mitochondrial genomes from Yang N, Nielsen R, and Hasegawa M. (1998). Ref: http://dx.doi.org/10.1093/oxfordjournals.molbev.a025888,
  • "cpREV" - "Empirical model of protein evolution for chloroplast genomes from from Adachi et al. (2000). Ref: https://www.ncbi.nlm.nih.gov/pubmed/10795826"
  • "HIVBm" - "Empirical model of protein evolution for between-host HIV sequences from Nickle et al. (2007). Ref: https://doi.org/10.1371/journal.pone.0000503"
  • "HIVWm" - "Empirical model of protein evolution for within-host HIV sequences from Nickle et al. (2007). Ref: https://doi.org/10.1371/journal.pone.0000503"
  • "AB" - "Empirical model of protein evolution for antibody sequences from Mirsky et al. (2015). Ref: https://doi.org/10.1093/molbev/msu340"

• [#683] GARD results formatted to be consistent with other methods (Steven Weaver)

• Bug fixes for #685, #687, #689, and #700 (Sergei Pond)

Please see the associated pull request for a complete listing of commits included in this release.