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Reads from different samples interleave oddly when skipping nodes #431

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adamnovak opened this issue May 8, 2024 · 1 comment · Fixed by #440
Closed

Reads from different samples interleave oddly when skipping nodes #431

adamnovak opened this issue May 8, 2024 · 1 comment · Fixed by #440
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@adamnovak
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See Tumor-specific A -> AAAAAAATATATATATATAT INS variant at chr1:86645909 for example. The reads should stay separated by sample even as they skip nodes.

@adamnovak adamnovak self-assigned this May 8, 2024
@adamnovak
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It probably has to do with this logic for sorting no-node reads:

elementsWithoutNode.sort(compareNoNodeReadsByPreviousY);
elementsWithoutNode.forEach((element) => {
const segment = reads[element.readIndex].path[element.pathIndex];
segment.y = bottomY[segment.order];
bottomY[segment.order] += reads[element.readIndex].width;
});

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