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Pre-index non-alt paths to fix #3054
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,24 @@ | ||
{ | ||
"node": [ | ||
{"id": 1, "sequence": "CTTAAAATGATCGGGACTTTTCAAATCTTATTT"} | ||
], | ||
"edge": [ | ||
], | ||
"path": [ | ||
{"name": "ref", "mapping": [ | ||
{"rank": 1, "edit": [ | ||
{"from_length": 33, "to_length": 33} | ||
], "position": {"node_id": 1, "offset": 0, "is_reverse": true}} | ||
]}, | ||
{"name": "ref2", "mapping": [ | ||
{"rank": 1, "edit": [ | ||
{"from_length": 33, "to_length": 33} | ||
], "position": {"node_id": 1, "offset": 0}} | ||
]}, | ||
{"name": "ref3", "mapping": [ | ||
{"rank": 1, "edit": [ | ||
{"from_length": 33, "to_length": 33} | ||
], "position": {"node_id": 1, "offset": 0, "is_reverse": true}} | ||
]} | ||
] | ||
} |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,15 @@ | ||
##fileformat=VCFv4.0 | ||
##fileDate=20090805 | ||
##source=myImputationProgramV3.1 | ||
##reference=1000GenomesPilot-NCBI36 | ||
##phasing=partial | ||
##FILTER=<ID=q10,Description="Quality below 10"> | ||
##FILTER=<ID=s50,Description="Less than 50% of samples have data"> | ||
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | ||
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE1 SAMPLE2 SAMPLE3 SAMPLE4 | ||
ref 18 . TC T 100 PASS . GT 1/0 0/0 0|0 ././1 | ||
ref 21 . CGA GAC 100 PASS . GT 0/1 0/0 ./1 ./1/. | ||
ref 23 . A AC 100 PASS . GT 0/0 1/0 . ./0 | ||
ref3 18 . TC T 100 PASS . GT 1/0 0/0 0|0 ././1 | ||
ref3 21 . CGA GAC 100 PASS . GT 0/1 0/0 ./1 ./1/. | ||
ref3 23 . A AC 100 PASS . GT 0/0 1/0 . ./0 |
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vg CI tests complete for branch allow-add-overlap. View the full report here.
16 tests passed, 0 tests failed and 0 tests skipped in 14285 seconds