Code and data used to create custom UCSC Genome Browser tracks for JASPAR 2018.
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Latest commit efc6fee Sep 18, 2018

README.md

JASPAR UCSC tracks

TO BE UPDATED

News

01/07/2018 The JASPAR UCSC tracks module now uses PWMScan, instead of MEME and the Perl TFBS package, for speeding-up genome-wide TFBS predictions.

Content

The repository is organized as follows:

  • The files folder contains the output from make_files.py: i.e. the JASPAR profiles from the different CORE collections
  • The scripts functions.py, jaspar_search.py and make_files.py

The original scripts used for the publication of JASPAR 2018 have been placed in the version-1.0 folder.

Dependencies

The scripts for creating the JASPAR UCSC tracks require the following dependencies:

Usage

TO BE UPDATED