Rename the files using python name convention

Convert - to _ in both the file names and script name
Update the test files

scripts/abalone-age.json → scripts/abalone_age.json

@@ -59,5 +59,5 @@
     "urls": {
         "data": "http://archive.ics.uci.edu/ml/machine-learning-databases/abalone/abalone.data"
     },
-    "version": "1.2.0"
+    "version": "1.2.1"
 }

scripts/amniote-life-hist.json → scripts/amniote_life_hist.json

@@ -104,5 +104,5 @@
     "urls": {
         "main": "http://esapubs.org/archive/ecol/E096/269/Data_Files/Amniote_Database_Aug_2015.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/antarctic-breed-bird.json → scripts/antarctic_breed_bird.json

@@ -20,5 +20,5 @@
     "urls": {
         "species": "http://esapubs.org/archive/ecol/E094/243/Antarctic_Site_Inventory_census_data_1994_2012.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/biomass-allometry-db.py → scripts/biomass_allometry_db.py

@@ -15,7 +15,7 @@ def __init__(self, **kwargs):
         self.citation = "Falster, D.S., Duursma, R.A., Ishihara, M.I., Barneche, D.R., FitzJohn, R.G., Varhammar, A., Aiba, M., Ando, M., Anten, N., Aspinwall, M.J. and Baltzer, J.L., 2015. BAAD: a Biomass And Allometry Database for woody plants."
         self.tags = ['plants', 'observational']
         self.retriever_minimum_version = "2.0.dev"
-        self.version = "1.2.0"
+        self.version = "1.2.1"
         self.description = "The data set is a Biomass and allometry database (BAAD) for woody plants containing 259634 measurements collected in 176 different studies from 21084 individuals across 678 species."
 
     def download(self, engine=None, debug=False):

scripts/bird-size.json → scripts/bird_size.json

@@ -25,5 +25,5 @@
     "urls": {
         "species": "http://esapubs.org/archive/ecol/E088/096/avian_ssd_jan07.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/breast-cancer-wi.json → scripts/breast_cancer_wi.json

@@ -198,5 +198,5 @@
         "wdbc": "http://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/wdbc.data",
         "wpbc": "http://archive.ics.uci.edu/ml/machine-learning-databases/breast-cancer-wisconsin/wpbc.data"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/breed-bird-survey.py → scripts/breed_bird_survey.py

@@ -27,7 +27,7 @@ def __init__(self, **kwargs):
         self.ref = "http://www.pwrc.usgs.gov/BBS/"
         self.tags = ["birds", "continental-scale"]
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.3.0'
+        self.version = '1.3.1'
         self.urls = {
                      "counts": "ftp://ftpext.usgs.gov/pub/er/md/laurel/BBS/DataFiles/States/",
                      "routes": "ftp://ftpext.usgs.gov/pub/er/md/laurel/BBS/DataFiles/Routes.zip",

scripts/breed-bird-survey-50stop.py → scripts/breed_bird_survey_50stop.py

@@ -28,7 +28,7 @@ def __init__(self, **kwargs):
         self.ref = "http://www.pwrc.usgs.gov/BBS/"
         self.tags = ["birds", "continental-scale"]
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.3.0'
+        self.version = '1.3.1'
         self.urls = {
                      "counts": "ftp://ftpext.usgs.gov/pub/er/md/laurel/BBS/DataFiles/50-StopData/1997ToPresent_SurveyWide/",
                      "routes": "ftp://ftpext.usgs.gov/pub/er/md/laurel/BBS/DataFiles/Routes.zip",

scripts/butterfly-population-network.json → scripts/butterfly_population_network.json

@@ -57,5 +57,5 @@
         "PopulationAbunMark_Recap": "http://esapubs.org/archive/ecol/E095/258/PopulationAbunMark-Recap.csv",
         "PopulationAbunTransect": "http://esapubs.org/archive/ecol/E095/258/PopulationAbunTransect.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/car-eval.json → scripts/car_eval.json

@@ -51,5 +51,5 @@
     "urls": {
         "data": "http://archive.ics.uci.edu/ml/machine-learning-databases/car/car.data"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/community-abundance-misc.json → scripts/community_abundance_misc.json

@@ -30,5 +30,5 @@
         "main": "http://files.figshare.com/2023547/Species_abundances.csv",
         "sites": "http://files.figshare.com/2023504/Sites_table_abundances.csv"
     },
-    "version": 1.0
+    "version": "1.0.1"
 }

scripts/elton-traits.json → scripts/elton_traits.json

@@ -42,5 +42,5 @@
         "MammCitations": "http://esapubs.org/archive/ecol/E095/178/MamFuncDatSources.txt",
         "MammFuncDat": "http://esapubs.org/archive/ecol/E095/178/MamFuncDat.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/fish-parasite-hosts.json → scripts/fish_parasite_hosts.json

@@ -98,5 +98,5 @@
     "urls": {
         "host_characteristics": "http://esapubs.org/archive/ecol/E094/045/FPEDB.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/forest-biomass-china.json → scripts/forest_biomass_china.json

@@ -27,5 +27,5 @@
     "urls": {
         "biomass": "http://esapubs.org/archive/ecol/E095/177/CForBioData_v1.0.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/forest-fires-portugal.json → scripts/forest_fires_portugal.json

@@ -71,5 +71,5 @@
     "urls": {
         "data": "http://archive.ics.uci.edu/ml/machine-learning-databases/forest-fires/forestfires.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/forest-inventory-analysis.py → scripts/forest_inventory_analysis.py

@@ -19,7 +19,7 @@ def __init__(self, **kwargs):
         self.name = "Forest Inventory and Analysis"
         self.shortname = "forest-inventory-analysis"
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.3.0'
+        self.version = '1.3.1'
         self.ref = "http://fia.fs.fed.us/"
         self.urls = {"main": "https://apps.fs.usda.gov/fiadb-downloads/CSV/",
                      'species': 'https://apps.fs.usda.gov/fiadb-downloads/CSV/REF_SPECIES.csv'}

scripts/forest-plots-michigan.json → scripts/forest_plots_michigan.json

@@ -162,5 +162,5 @@
         "swamp": "http://www.esapubs.org/archive/ecol/E090/251/datafiles/swamp_all_modern.txt",
         "upland_plots_1989_2007": "http://www.esapubs.org/archive/ecol/E090/251/datafiles/upland_plots_89-07.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/forest-plots-wghats.json → scripts/forest_plots_wghats.json

@@ -194,5 +194,5 @@
         "sites": "http://esapubs.org/archive/ecol/E091/216/Site_variables.txt",
         "species": "http://esapubs.org/archive/ecol/E091/216/Species_list.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/fray-jorge-ecology.json → scripts/fray_jorge_ecology.json

@@ -260,5 +260,5 @@
         "precip": "http://esapubs.org/archive/ecol/E094/084/data/Fray_Jorge_Precipitation_1989-2005.csv",
         "seeds": "http://esapubs.org/archive/ecol/E094/084/data/Fray_Jorge_Seeds_1989-2002.txt"
     },
-    "version": "1.2.0"
+    "version": "1.2.1"
 }

scripts/gentry-forest-transects.py → scripts/gentry_forest_transects.py

@@ -25,7 +25,7 @@ def __init__(self, **kwargs):
         self.name = "Alwyn H. Gentry Forest Transect Dataset"
         self.shortname = "gentry-forest-transects"
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.3.0'
+        self.version = '1.3.1'
         self.urls = {"stems": "http://www.mobot.org/mobot/gentry/123/all_Excel.zip",
                      "sites": "https://ndownloader.figshare.com/files/5515373",
                      "species": "",

scripts/home-ranges.json → scripts/home_ranges.json

@@ -28,5 +28,5 @@
     "urls": {
         "home_ranges": "http://datadryad.org/bitstream/handle/10255/dryad.84768/Tamburelloetal_HomeRangeDatabase.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/intertidal-abund-me.py → scripts/intertidal_abund_me.py

@@ -12,7 +12,7 @@ def __init__(self):
                         ref="http://www.esapubs.org/archive/ecol/E089/032/",
                         description="The data set provides access to data on densities and percent cover in the 60 experimental plots from 2003 to 2007 and to update data from 1996 to 2002 that are already published in Ecological Archives.It includes densities of mussels, an herbivorous limpet, herbivorous snails, a predatory snail, a barnacle , and fucoid algae and percent cover by mussels, barnacles, fucoids, and other sessile organisms.",
                         retriever_minimum_version='2.0.dev',
-                        version='1.3.0',
+                        version='1.3.1',
                         urls={"main": "http://www.esapubs.org/archive/ecol/E089/032/Succession_sampling_03-07_data.txt"},
                         tables={"main": Table("main", cleanup=Cleanup(correct_invalid_value, nulls=[-999.9]))}
                         )

scripts/la-selva-trees.py → scripts/la_selva_trees.py

@@ -14,7 +14,7 @@ def __init__(self):
                         description="The data set helps to examine the post-establishment ecology of 10 species of tropical wet forest trees selected to span a range of predicted life history patterns at the La Selva Biological Station in Costa Rica.",
                         ref="http://esapubs.org/archive/ecol/E087/132/",
                         retriever_minimum_version= "2.0.dev",
-                        version='1.2.0',
+                        version='1.2.1',
                         citation="David B. Clark and Deborah A. Clark. 2006. Tree growth, mortality, physical condition, and microsite in an old-growth lowland tropical rain forest. Ecology 87:2132.")
 
     def download(self, engine=None, debug=False):

scripts/leaf-herbivory.json → scripts/leaf_herbivory.json

@@ -20,5 +20,5 @@
     "urls": {
         "Leaf_herbivory": "http://www.esapubs.org/archive/ecol/E095/065/Leaf_herbivory.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mammal-community-db.json → scripts/mammal_community_db.json

@@ -51,5 +51,5 @@
         "species": "http://esapubs.org/archive/ecol/E092/201/data/MCDB_species.csv",
         "trapping": "http://esapubs.org/archive/ecol/E092/201/data/MCDB_trapping.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mammal-diet.json → scripts/mammal_diet.json

@@ -148,5 +148,5 @@
     "urls": {
         "diet": "http://datadryad.org/bitstream/handle/10255/dryad.64565/MammalDIET_v1.0.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mammal-life-hist.json → scripts/mammal_life_hist.json

@@ -22,5 +22,5 @@
     "urls": {
         "species": "http://esapubs.org/archive/ecol/E084/093/Mammal_lifehistories_v2.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mammal-masses.json → scripts/mammal_masses.json

@@ -76,5 +76,5 @@
     "urls": {
         "MammalMasses": "http://www.esapubs.org/Archive/ecol/E084/094/MOMv3.3.txt"
     },
-    "version": "1.2.0"
+    "version": "1.2.1"
 }

scripts/mammal-metabolic-rate.json → scripts/mammal_metabolic_rate.json

@@ -26,5 +26,5 @@
     "urls": {
         "MetabolicRate": "http://www.esapubs.org/archive/ecol/E091/198/data.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mapped-plant-quads-co.json → scripts/mapped_plant_quads_co.json

@@ -104,5 +104,5 @@
         "species_list": "http://esapubs.org/archive/ecol/E094/128/species_list.csv",
         "species_name_changes": "http://esapubs.org/archive/ecol/E094/128/species_name_changes.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mapped-plant-quads-id.json → scripts/mapped_plant_quads_id.json

@@ -234,5 +234,5 @@
         "species": "http://esapubs.org/archive/ecol/E091/243/species_list.csv",
         "taxonomy": "http://esapubs.org/archive/ecol/E091/243/taxonomic_grouping.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mapped-plant-quads-ks.json → scripts/mapped_plant_quads_ks.json

@@ -162,5 +162,5 @@
         "quadrat_inventory": "http://esapubs.org/archive/ecol/E088/161/quadrat_inventory.csv",
         "species": "http://esapubs.org/archive/ecol/E088/161/species_list.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mapped-plant-quads-mt.json → scripts/mapped_plant_quads_mt.json

@@ -31,5 +31,5 @@
         "allrecords_density": "http://esapubs.org/archive/ecol/E092/143/allrecords_density.csv",
         "species_list": "http://esapubs.org/archive/ecol/E092/143/species_list.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/mt-st-helens-veg.json → scripts/mt_st_helens_veg.json

@@ -166,5 +166,5 @@
         "species_plot_year": "http://esapubs.org/archive/ecol/E091/152/MSH_SPECIES_PLOT_YEAR.csv",
         "structure_plot_year": "http://esapubs.org/archive/ecol/E091/152/MSH_STRUCTURE_PLOT_YEAR.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/phytoplankton-size.json → scripts/phytoplankton_size.json

@@ -81,5 +81,5 @@
         "bvd_species_raw": "http://esapubs.org/archive/ecol/E095/257/bvd_species_raw_030614.csv",
         "taxa_table": "http://esapubs.org/archive/ecol/E095/257/taxa_table_030614.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/plant-comp-ok.json → scripts/plant_comp_ok.json

@@ -58,5 +58,5 @@
         "richness": "http://esapubs.org/archive/ecol/E091/124/TGPP_rich.csv",
         "species": "http://esapubs.org/archive/ecol/E091/124/TGPP_specodes.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/plant-life-hist-eu.py → scripts/plant_life_hist_eu.py

@@ -12,7 +12,7 @@ def __init__(self, **kwargs):
         self.name = "A database on the life history traits of the Northwest European flora" 
         self.shortname = "plant-life-hist-eu"
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.3.0'
+        self.version = '1.3.1'
         self.ref = "http://www.uni-oldenburg.de/en/biology/landeco/research/projects/leda/"
         self.urls = {
             "Age_of_first_flowering": "http://www.uni-oldenburg.de/fileadmin/user_upload/biologie/ag/landeco/download/LEDA/Data_files/age_of_first_flowering.txt",

scripts/plant-occur-oosting.json → scripts/plant_occur_oosting.json

@@ -62,5 +62,5 @@
         "species": "http://esapubs.org/archive/ecol/E088/162/species_codes.txt",
         "trees": "http://esapubs.org/archive/ecol/E088/162/Oosting_Trees_1998.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/plant-taxonomy-us.json → scripts/plant_taxonomy_us.json

@@ -53,5 +53,5 @@
     "urls": {
         "PlantTaxonomy": "http://plants.usda.gov/java/downloadData?fileName=plantlst.txt&static=true"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/poker-hands.json → scripts/poker_hands.json

@@ -126,5 +126,5 @@
         "testing": "http://archive.ics.uci.edu/ml/machine-learning-databases/poker/poker-hand-testing.data",
         "training": "http://archive.ics.uci.edu/ml/machine-learning-databases/poker/poker-hand-training-true.data"
     },
-    "version": "1.2.0"
+    "version": "1.2.1"
 }

scripts/predator-prey-size-marine.json → scripts/predator_prey_size_marine.json

@@ -27,5 +27,5 @@
     "urls": {
         "main": "http://www.esapubs.org/Archive/ecol/E089/051/Predator_and_prey_body_sizes_in_marine_food_webs_vsn3.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/prism-climate.py → scripts/prism_climate.py

@@ -14,7 +14,7 @@ def __init__(self, **kwargs):
         self.name = "PRISM Climate Data"
         self.shortname = "prism-climate"
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.1.0'
+        self.version = '1.1.1'
         self.ref = "http://prism.oregonstate.edu/"
         self.urls = {"climate": "http://services.nacse.org/prism/data/public/4km/"}
         self.description = "The PRISM data set represents climate observations from a wide range of monitoring networks, applies sophisticated quality control measures, and develops spatial climate datasets to reveal short- and long-term climate patterns. "

scripts/tree-demog-wghats.json → scripts/tree_demog_wghats.json

@@ -36,5 +36,5 @@
         "ind_loc_girth": "http://esapubs.org/archive/ecol/E092/115/UPSP_Demo_data.txt",
         "sp_list": "http://esapubs.org/archive/ecol/E092/115/UPSP_Species_list2.txt"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/veg-plots-sdl.json → scripts/veg_plots_sdl.json

@@ -112,5 +112,5 @@
         "Species": "http://esapubs.org/archive/ecol/E094/083/Species.csv",
         "Stake_info": "http://esapubs.org/archive/ecol/E094/083/Stake_info.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/wine-composition.json → scripts/wine_composition.json

@@ -75,5 +75,5 @@
     ],
     "retriever": "True",
     "title": "Wine Composition",
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/wine-quality.json → scripts/wine_quality.json

@@ -134,5 +134,5 @@
         "red": "http://archive.ics.uci.edu/ml/machine-learning-databases/wine-quality/winequality-red.csv",
         "white": "http://archive.ics.uci.edu/ml/machine-learning-databases/wine-quality/winequality-white.csv"
     },
-    "version": "1.1.0"
+    "version": "1.1.1"
 }

scripts/wood-density.py → scripts/wood_density.py

@@ -20,7 +20,7 @@ def __init__(self, **kwargs):
         self.name = "Global wood density database - Zanne et al. 2009"
         self.shortname = "wood-density"
         self.retriever_minimum_version = '2.0.dev'
-        self.version = '1.2.0'
+        self.version = '1.2.1'
         self.urls = {"GWDD": "http://datadryad.org/bitstream/handle/10255/dryad.235/GlobalWoodDensityDatabase.xls?sequence=1"}
         self.tags = ["Taxon > Plants", "Spatial Scale > Global",
                      "Data Type > Observational"]

test/test_regression_cli.py

@@ -32,9 +32,9 @@
 ]
 
 db_md5 = [
-    # ('DelMoral2010', '0'),
-    ('bird-size', '98dcfdca19d729c90ee1c6db5221b775'),
-    ('mammal-masses', '6fec0fc63007a4040d9bbc5cfcd9953e')
+    # ('mt_st_helens_veg', '0'),
+    ('bird_size', '98dcfdca19d729c90ee1c6db5221b775'),
+    ('mammal_masses', '6fec0fc63007a4040d9bbc5cfcd9953e')
 ]