decotur published

weissmanlab · Jun 9, 2023 · c0d4f13 · c0d4f13
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diff --git a/people/cv.pdf b/people/cv.pdf
diff --git a/research/inference.md b/research/inference.md
@@ -13,7 +13,7 @@ Doing so will require new analytical tools that ask questions that are only now
 
 Papers:
 
-- [Mehta et al (2022), Detecting patterns of accessory genome coevolution in bacterial species using data from thousands of bacterial genomes](https://www.biorxiv.org/content/10.1101/2022.03.14.484367)
+- [Mehta et al (2023), Detecting patterns of accessory genome coevolution in _Staphylococcus aureus_ using data from thousands of genomes](https://doi.org/10.1186/s12859-023-05363-4)---please [try it out](https://github.com/weissmanlab/decotur) on other species and let us know what you think!
 - [Ghafari et al (2022), Investigating the evolutionary origins of the first three SARS-CoV-2 variants of concern](http://dx.doi.org/10.3389/fviro.2022.942555)
 - [Ghafari et al (2020), Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method](https://journals.asm.org/doi/full/10.1128/JVI.00014-20)
 - [Sobel Leonard et al (2017), Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus](http://jvi.asm.org/content/early/2017/04/27/JVI.00171-17.abstract), and see [correction](https://journals.asm.org/doi/full/10.1128/JVI.00936-19). [Try it out!](https://github.com/weissmanlab/BB_bottleneck)