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weka511 · Sep 11, 2017 · 00013e3 · 00013e3
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diff --git a/BA8A.py b/BA8A.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import random,math
 
 def FarthestFirstTraversal(data,k,m):

diff --git a/BA8B.py b/BA8B.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import random,math
 
 def SquaredErrorDistortion(data,k,m):

diff --git a/BA8C.py b/BA8C.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def trivial_centres(k,m,data):
     return [data[i] for i in range(k)]
 

diff --git a/BA8D.py b/BA8D.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import numpy as np
 
 def soft_kmeans(k,m,beta,points,N=1,centres=None):

diff --git a/BINS.py b/BINS.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def bins(n,m,a,values):
     def search(value,imin,imax):
         if imin>imax:

diff --git a/CORR.py b/CORR.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def revc(dna):
 	return dna.translate({
 	    ord('A'): 'T',

diff --git a/DDEG.py b/DDEG.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import DEG
 
 def ddeg(n,M,A):

diff --git a/DEG.py b/DEG.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def deg(n,m,A):
     degrees=[0 for a in range(n)]
     for (a,b) in A:
@@ -20,24 +35,3 @@ def deg(n,m,A):
         #print(A[1:])
         print (deg(n,m,A[1:]))
         print ('Elapsed: {0} seconds'.format(timeit.default_timer() - start_time))
-#A=[
-   #[1, 2],
-   #[2, 3],
-   #[6, 3],
-   #[5, 6],
-   #[2, 5],
-   #[2, 4],
-   #[4, 1]] 
-
-#print (deg(6,7,A))
-
-#6 7
-#1 2
-#2 3
-#6 3
-#5 6
-#2 5
-#2 4
-#4 1
-
-#2 4 2 2 2 2
diff --git a/FRMT.py b/FRMT.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 from Bio import Entrez,SeqIO
 inputs = 'JN698988 NM_001271262 JN573266 JQ342169 NM_001133698 JX462669 NM_204821 BT149867 JX472277'
 

diff --git a/GBK.py b/GBK.py
@@ -1,3 +1,17 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
 Entrez.email = "simon@greenweaves.nz"
 handle = Entrez.esearch(db="nucleotide", term='"Zea mays"[Organism] AND rbcL[Gene]')
 record = Entrez.read(handle)

diff --git a/INS.py b/INS.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def ins(n,A):
     swap=0
     for i in range(1,n):

diff --git a/INV.py b/INV.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import timeit
 
 def inv(n,A):

diff --git a/LONG.py b/LONG.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def match(s1,s2):
     index=-1
     for i in range(min(len(s1),len(s2))//2,min(len(s1),len(s2))):

diff --git a/MED.py b/MED.py
@@ -1,3 +1,17 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
 
 import random
 

diff --git a/MER.py b/MER.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def mer(n,A,m,B):
     i=0
     j=0

diff --git a/MS.py b/MS.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 import MER
 
 def ms(n,A):

diff --git a/PAR.py b/PAR.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 def par(n,A):
     prefix=[]
     suffix=[A[0]]
@@ -8,7 +23,6 @@ def par(n,A):
             suffix.append(a)
     return prefix + suffix
 
-#print(par(9,[7, 2 ,5 ,6, 1, 3, 9, 4, 8]))
 
 if __name__=='__main__':
 

diff --git a/PAR3.py b/PAR3.py
@@ -1,3 +1,17 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
 def par3(n,A):
     prefix=[]
     suffix=[]
@@ -11,7 +25,6 @@ def par3(n,A):
             suffix.append(a)
     return prefix + mid + suffix
 
-#print(par3(9,[4 ,5, 6, 4 ,1, 2, 5, 7, 4]))
 
 if __name__=='__main__':
 

diff --git a/PTRA.py b/PTRA.py
@@ -1,3 +1,18 @@
+# Copyright (C) 2017 Greenweaves Software Pty Ltd
+
+# This is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# This software is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>
+
 from Bio.Seq import translate
 import sys