visualizing MSFragger for Glyco

[fazeliniah]

Hi PDV developer team,
We have been searching some o-linked enriched glyco-proteomics data using MSFragger. Can we visualize the spectra in PDV? Does PDV handle and show the diagnostic fragment masses?
Thanks

[KaiLiCn]

Hi,

PDV cannot handle o-linked enriched glyco-proteomics data results from MSFragger right now since we cannot get localization information from it. But we are working closely with the MSFragger team and this function is on our to-do list.

Kai

[anesvi]

We should touch base to see what needs to be done on our (MSFragger) side. It would be good to enable it soon Best Alexey

…

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[fazeliniah]

That will be great. We still haven't figured out what the best way is to (visually) inspect the quality of the o-linked glycopeptide spectra. Thanks for getting back to me so quickly.