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tweak README
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hpratt committed May 16, 2020
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# kallisto task for RNA-seq

This task provides a convenience wrapper around [kallisto](https://pachterlab.github.io/kallisto/). It can compute gene quantifications from reads in FASTQ format or build a kallisto index from transcript sequences in FASTA format.
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|output|path to output file; if it exists, it will be overwritten|(required)|
|kmer-size|the kmer size to use|31|
|make-unique|if set, sequences with duplicate names are made unique|false|

**Quantification**:
|name|description|default|
|--|--|--|
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