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TCGA Splicing Variation Database
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README.md

Bug Report & Suggestion

Please feel free to open an issue or sent an email to sunwenjie(at)zju.edu.cn.

TSVdb

TCGA Splicing Variation Database

Usage

TSVdb is an easy-to-use web tool for the integration and visualization of mRNA splicing variation, transcirptional isoform expression and clinical information from The Cancer Genome Atlas project (TCGA) RNASeq data.

API

Check gene input

http://localhost:8082?gene=[gene name or entrezid]&tumor=[tumor type]

Query Json for plot

http://localhost:8081?gene=[gene name or entrezid]&tumor=[tumor type]&cd=[clinical information type]&area=[exon or junction]

Download data table

http://localhost:8083?gene=[gene name or entrezid]&tumor=[tumor type]&cd=[clinical information type]&area=[exon or junction]

Demo

Setup

git clone git@github.com:wenjie1991/TSVdb.git
cd TSVdb
http-server -p 8080
chrome http://localhost:8080/index.html
chrome http://localhost:8080/instruction.html
chrome http://localhost:8080/plot.html

Test (for plot_demo.html)

In plot_demo.html: COAD -> 1 -> Exon -> SampleType
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