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# Ma_2018 | ||
R Code and Misc Files for Ma, Boudreau, Leto 2018 publication | ||
# Ma_2020 | ||
R Code and Misc Files for Ma, Boudreau, Leto 2020 publication. | ||
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<a href="https://zenodo.org/badge/latestdoi/93648151"><img src="https://zenodo.org/badge/93648151.svg" alt="DOI"></a> | ||
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Important Notes: | ||
1. Please set the working directory in the R script to a folder of your choosing. If you do not know how to do that, you may simply create a folder named R-Cache on your desktop and it will run smoothly. | ||
2. Please put the three required files in your working directory. Gene expression data from Broad Firehose will be downloaded automatically but annotation data must be imported locally. | ||
3. Please ensure that you have installed all the indicated libraries needed for the script. Refer to the top of the script for details. | ||
4. Contact me at wm5wt@virginia.edu or weimasemail@gmail.com if you have trouble running the script. | ||
4. Contact me at weima@virginia.edu or weimasemail@gmail.com if you have trouble running the script. | ||
5. The analysis is divided into several individual scripts to promote efficiency- so that you don't have to run the entire analysis if you just want to reproduce a portion of the data. Please read the file name to determine which section is relavent to your interests. |