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163 Open 302 Closed
163 Open 302 Closed
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Issues list

Block cut sensitivity 0 not working as intended
#549 opened Jul 2, 2024 by schrins
@schrins
No phased genotypes were generated.
#544 opened Jun 24, 2024 by leon945945
Add option to provide a BED file to whatshap compare enhancement New feature or request
#543 opened Jun 24, 2024 by eblerjana
phasing in region-of-interests with multiple copies
#542 opened Jun 23, 2024 by leqi0001
1
allow supplemental alignment in polyphase function
#541 opened Jun 23, 2024 by leqi0001
no phased file
#536 opened May 21, 2024 by ScarlettPegany
1
BAM file reading issue for haplotagphase
#534 opened May 17, 2024 by pdimens
6
around 30% heterozygous variants were not phased
#531 opened Apr 15, 2024 by WeiCSong
5
Remove support for HP tags
#529 opened Apr 10, 2024 by marcelm
phasing tumor data
#527 opened Apr 8, 2024 by eesiribloom
1
haplotag polyploidy ValueError
#526 opened Apr 8, 2024 by yeonjin968
4
Phasing of chromosomes without a duplicate
#524 opened Mar 22, 2024 by LauraSkak
1
WhatsHap polyphasegenetic throws an error about indel usage
#523 opened Mar 19, 2024 by schrins
@schrins
Phase a vcf with haplotagged reads
#520 opened Mar 15, 2024 by mrvollger
5
polyploid split error
#519 opened Mar 7, 2024 by rmormando
1
switching of haplotag in trio pedigree phasing of ONT data
#518 opened Mar 6, 2024 by SanVerb
1
Whatshap compare: why switch errors decimals?
#515 opened Feb 7, 2024 by mhooykaas
2
whatshap compare fails when multi-allelic variants are present
#513 opened Jan 30, 2024 by Zhiiiiiaozhao
2
Merge reads with identical allele pattern in polyphase task
#510 opened Jan 22, 2024 by schrins
@schrins
1
Phasing confusion
#508 opened Jan 11, 2024 by weishwu
2
Haplotagging and splitting phased vcf from subcommand polyphase
#507 opened Dec 26, 2023 by NaphatCode
1
The phasing of an 11-member family is frozen
#506 opened Dec 22, 2023 by PlatonB
1
read occurs twice error
#504 opened Nov 28, 2023 by suvi93
9
Cannot phase gVCFs with <NON_REF>
#502 opened Nov 20, 2023 by wsstoregene
6
Rework interface of haplotype threader in polyploid module task
#500 opened Nov 18, 2023 by schrins
@schrins
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