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WhatsHap polyphase genetic is currently not usable, because the module complains about an indels_used. Adding an --only-snvs flag or the deprecated --indels flag does not change the behavior.
Traceback (most recent call last):
File "/srv/homes/schrinner/polyphase-pipeline/whatshap-polyphase-experiments/polyploid_human/evaluation/.snakemake/conda/d6c9a753ce0b321feabdd11be95d2e4f_/bin/whatshap", line 10, in <module>
sys.exit(main())
File "/srv/homes/schrinner/polyphase-pipeline/whatshap-polyphase-experiments/polyploid_human/evaluation/.snakemake/conda/d6c9a753ce0b321feabdd11be95d2e4f_/lib/python3.10/site-packages/whatshap/__main__.py", line 64, in main
module.main(args)
File "/srv/homes/schrinner/polyphase-pipeline/whatshap-polyphase-experiments/polyploid_human/evaluation/.snakemake/conda/d6c9a753ce0b321feabdd11be95d2e4f_/lib/python3.10/site-packages/whatshap/cli/polyphasegenetic.py", line 642, in main
run_polyphasegenetic(**vars(args))
TypeError: run_polyphasegenetic() got an unexpected keyword argument 'indels_used'
The text was updated successfully, but these errors were encountered:
WhatsHap polyphase genetic is currently not usable, because the module complains about an
indels_used
. Adding an--only-snvs
flag or the deprecated--indels
flag does not change the behavior.The text was updated successfully, but these errors were encountered: