modify bowtie2 interface module names

[widdowquinn]

This commit modifies the module names for bowtie2 and could affect the metapy script.

[peterthorpe5]

Yes, its fine to break metapy.py , I will adjust this accordingly. As this is the future direction of the module. I have fallen way behind with all these commits! From: Leighton Pritchard [mailto:notifications@github.com] Sent: 11 May 2017 16:33 To: widdowquinn/THAPBI-pycits Cc: Subscribed Subject: [widdowquinn/THAPBI-pycits] modify bowtie2 interface module names (#81) This commit modifies the module names for bowtie2 and could affect the metapy script.

…

________________________________ You can view, comment on, or merge this pull request online at: #81 Commit Summary * modify bowtie2 interface module names File Changes * R pycits/bowtie2.py<https://github.com/widdowquinn/THAPBI-pycits/pull/81/files#diff-0> (31) * R pycits/bowtie2_build.py<https://github.com/widdowquinn/THAPBI-pycits/pull/81/files#diff-1> (2) * M tests/test_wrapper_bowtie2.py<https://github.com/widdowquinn/THAPBI-pycits/pull/81/files#diff-2> (65) * M tests/test_wrapper_bowtie2_build.py<https://github.com/widdowquinn/THAPBI-pycits/pull/81/files#diff-3> (17) Patch Links: * https://github.com/widdowquinn/THAPBI-pycits/pull/81.patch * https://github.com/widdowquinn/THAPBI-pycits/pull/81.diff — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#81>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AJhCqKv_bJ7gG91Vl0DahdkXm5vS1XS3ks5r4yorgaJpZM4NYLWD>. The James Hutton Institute is a Scottish charitable company limited by guarantee. Registered in Scotland No. SC374831 Registered Office: The James Hutton Institute, Invergowrie Dundee DD2 5DA. Charity No. SC041796

[codecov]

Codecov Report

Merging #81 into master will decrease coverage by 0.02%.
The diff coverage is 100%.

@@            Coverage Diff             @@
##           master      #81      +/-   ##
==========================================
- Coverage   68.67%   68.65%   -0.03%     
==========================================
  Files          22       22              
  Lines        1194     1193       -1     
==========================================
- Hits          820      819       -1     
  Misses        374      374

Impacted Files	Coverage Δ
pycits/bowtie2_build.py	87.5% <ø> (ø)
pycits/bowtie2.py	85.71% <100%> (ø)

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