hardcode some types in the convertor?

[egonw]

Anwesha,

there are a number of ChEBI identifiers used in Reactome pathways which do not get annotated as @type="Metabolite" in the GPML.

What do you think of making a short list of known metabolites, so that when those IDs are identified the are marked as metabolite in the GPML?

That would solve a number of these errors (which are known upstream and haven't been fixed yet, it seems):

https://jenkins.bigcat.unimaas.nl/job/WikiPathways%20Curation%20(Reactome)/lastCompletedBuild/testReport/nl.unimaas.bigcat.wikipathways.curator/Metabolites/ChEBIIDsNotMarkedAsMetabolite/

[DeniseSl22]

I'll check if these problems still exists with new database uploads; then we can inform the Reactome team which datanodes we believe should be metabolites (since chebi also has some proteins).