Dovitinib is not annotated with a structure identifier in GPML (but is in original)

[egonw]

The resulting GPML has this, but looking at Dovitinib in Reactome (https://reactome.org/PathwayBrowser/#/R-HSA-5655302&DTAB=MT), it seems annotated with a PubChem compound identifier:

  <DataNode TextLabel="Dovitinib " GraphId="ba4b1" GroupRef="d4f5d">
    <Attribute Key="cellular_location" Value="cytosol" />
    <Attribute Key="complex_id" Value="R-ALL-2045079" />
    <Attribute Key="copies_num" Value="1" />
    <Graphics CenterX="0.0" CenterY="0.0" Width="0.0" Height="0.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="" ID="" />
  </DataNode>

[egonw]

It should be working:

reactome2gpml-converter/src/org/gk/gpml/ReactometoGPML2013.java

Lines 355 to 356 in 1a82248

	} else if (db.getDisplayName().equalsIgnoreCase("PubChem Compound")) {
	pwyele.setDataSource(DataSource.getExistingBySystemCode("Cpc"));