hacks for lots of constraints

willgearty · Aug 14, 2023 · 3724075 · 3724075
1 parent 500e616
commit 3724075
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diff --git a/src/core/distributions/phylogenetics/tree/birthdeath/AbstractBirthDeathProcess.cpp b/src/core/distributions/phylogenetics/tree/birthdeath/AbstractBirthDeathProcess.cpp
@@ -10,6 +10,8 @@
 #include "RbMathCombinatorialFunctions.h"
 #include "TopologyNode.h"
 #include "AbstractRootedTreeDistribution.h"
+#include "RandomNumberGenerator.h"
+#include "RandomNumberFactory.h"
 #include "Tree.h"
 
 namespace RevBayesCore { class Taxon; }
@@ -127,9 +129,15 @@ std::vector<double> AbstractBirthDeathProcess::simulateDivergenceTimes(size_t n,
     {
         double t = 0.0;
 
+        auto rng = GLOBAL_RNG;
+        double u = rng->uniform01();
+        t = min + u*(origin-min);
+
+        /*
         do {
             t = simulateDivergenceTime(origin, present);
         } while ( t < min );
+        */
 
         times[i] = t;
     }

diff --git a/src/revlanguage/parser/lex.yy.cpp b/src/revlanguage/parser/lex.yy.cpp
@@ -715,7 +715,7 @@ static int input ( void );
 /* On IA-64, the buffer size is 16k, not 8k */
 #define YY_READ_BUF_SIZE 16384
 #else
-#define YY_READ_BUF_SIZE 8192
+#define YY_READ_BUF_SIZE 65535
 #endif /* __ia64__ */
 #endif