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[wilzbach]

Suzi: I am imagining two scenarios, in the first if the user has done a motif search (or the domains have been previously located) then they would want to move along the proteins from domain to domain to look at the alignment for each to see if key residues have changed. Rather like using the database of conserved domains but easier (http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=257100 as an example). The other scenario is the pure location one as you say.