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Update README and improved TDO sync performance #2

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Spamming pulseClock causes the TDO mismatches as the uP because desynced from the jtag chain.

Should be tuned as per instructions given in XAPP085 but a base value of 1 is still better than the current implementation.
TDO is defined as PB5 in ports.h

Added updated info to the instructions
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