Merge pull request #336 from dozy/STAR_dir_perms

extend chmod of STAR directory to use g-s
wtsi-npg · Jun 10, 2024 · 4911a04 · 4911a04
2 parents 9d9fc5d + 05b9eac
commit 4911a04
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/data/vtlib/star_alignment.json b/data/vtlib/star_alignment.json
@@ -291,7 +291,7 @@
         "type":"EXEC",
         "use_STDIN": false,
         "use_STDOUT": false,
-        "cmd":[ "chmod", "-R", "g+w", {"port":"src_stargenome_dir", "direction":"in"} ],
+        "cmd":[ "chmod", "-R", "g+rwx,g-s", {"port":"src_stargenome_dir", "direction":"in"} ],
         "comment":"This is necessary because STAR creates this transitional directory as group-read-only and cannot be deleted later"
     },
     {