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Automatically detect and convert FASTQ to FASTA in the query #721

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merged 2 commits into from Jan 25, 2024

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tadast
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@tadast tadast commented Jan 25, 2024

If a user provides a valid FASTQ, it can be converted to FASTA
that can then be consumed by BLAST algorithms. Currently BLAST
errs given a fastq.

This should save users time and effort manually converting FASTQ
to FASTA.

If FASTQ is invalid, no modifications to user query will be made.

As part of this change notifications have also been moved to
the top of the screen, as we may have 2 notifications at once e.g.
FASTQ conversion notification + detected query type notification.

@ghost
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ghost commented Jan 25, 2024

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    Automatically detect and convert FASTQ in the query

    If a user provides a valid FASTQ, it can be converted to FASTA
    that can then be consumed by BLAST algorithms. Currently BLAST
    errs given a fastq.

    This should save users time and effort manually converting FASTQ
    to FASTA.

    If FASTQ is invalid, no modifications to user query will be made.

    As part of this change notifications have also been moved to
    the top of the screen, as we may have 2 notifications at once e.g.
    FASTQ conversion notification + detected query type notification.
@yannickwurm
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This is great - thank you

@yannickwurm yannickwurm merged commit e1a63f8 into wurmlab:master Jan 25, 2024
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2 participants