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tests: replace manual file reads with fs::read_to_string #64

tests: replace manual file reads with fs::read_to_string

tests: replace manual file reads with fs::read_to_string #64

Workflow file for this run

name: Test CoverM with Setup-Miniconda From Marketplace
on: [push, pull_request]
jobs:
miniconda_linux:
name: Miniconda ${{ matrix.os }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
os: ["ubuntu-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test
environment-file: coverm.yml
auto-activate-base: false
mamba-version: "*"
channels: conda-forge,defaults,bioconda
- run: |
conda info
conda list
- name: Run test
run: |
cargo test
miniconda_osx:
name: Miniconda ${{ matrix.os }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
os: ["macos-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test
environment-file: coverm-osx.yml
auto-activate-base: false
mamba-version: "*"
channels: conda-forge,defaults,bioconda
- run: |
conda info
conda list
- name: Run test
run: |
cargo test -- --skip bwa_mem2