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Update README.md
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wwood committed Jan 20, 2013
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Expand Up @@ -25,6 +25,27 @@ d[1].taxon_id.should == 2515075008

d[0].attributes['Status'].should == 'Finished' #=> the rest are in the attributes array
```
## How to get the metadata file

Go to IMG > Genome Browser: http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonList&page=taxonListAlpha

In the Table Configuration section:
* Genome Field > Click All
* Project Metadata > Click All
* Data Statistics > Click All

Click Display Genomes Again. In the Genome Browser section > Click Select All. Finally, click the Export button.

PS/ Don't trust the IMG metadata _too much_. There are some big mistakes, e.g. in the 16S copy number

PS2/ What have I done to create the FIXED metadata?
* I have deleted two occurences of "\r" (^M) by ""
* taxonoid 2515154013 has two extra fields: remove the two cells containing "Human wound, cranian"
* Replace cells containing "-1" by ""
* Replaced 'Marine archaeal group 1 BG20 (Nitrosoarchaeum limnia BG20)' by 'Nitrosoarchaeum limnia BG20'

(Download instructions kindly contributed by @fangly / Florent Angly)

## Project home page

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