v0.6.0

v0.6.0 is a major overhaul of the code base, and is a complete rewrite of the algorithm. It is now significantly "dumber" in the sense that it simply applies a brute force approach (all queries are aligned against all db seqs), but is reasonably fast and has minimal RAM requirements.

In the process of the rewrite, some functions such as 'cluster' have been removed - the plan is to reimplement these in future.

v0.5.0

• Add --translated option and tolerate amino acid input
• Update DB version to 2, old databases must now be rebuilt
• query, cluster: Add --kmer-length parameter and improve search sensitivity

v0.4.0

• cluster: --fragment-mode: Bug fixes and tolerate any -d parameter.

v0.2.0

• cluster: Add --fragment-method which should be faster than the regular method.

v0.1.2

• Fix bugs and add help detail for clustering mode
• Release a statically linked binary for Linux-x86_64.