BG-DTI

BG-DTI: A biological feature and heterogeneous network representation learning-based framework for drug–target interaction prediction

###Citation： If you have used BG-DTI or its modules in your research, please cite this paper

1. Environment setup

python:3.7.6

torch:1.4.0

scikit-learn:0.22.1

pandas:1.0.1

numpy:1.18.1

##2.Construct a dataset if you want using other datasets, you can proceed as follows: 1.Similarity calculation drug_rdkit_SimMat：Similarity calculation of medicinal chemistry formula (where rdkit needs to be run in python 3.9) pertion_fasta_SimMat：Target sequence similarity calculation

2.Edge Computing z_add_edge:Generate edge matrix and store it in CSV format

##3.start: python main.py # BG-DTI