Trying to get the github CI to work.

xinhe-lab · Jun 14, 2024 · 6cafb07 · 6cafb07
1 parent 2dbb148
commit 6cafb07
Showing 1 changed file with 6 additions and 3 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -28,9 +28,12 @@ jobs:
           install.packages(c("RSQLite","locuszoomr","pgenlibr","Rfast"))
           install.packages(c("knitr","rmarkdown","testthat","BiocManager"))
           install.packages(c("crayon","rcmdcheck"))
-          BiocManager::install("ensembldb")
-          BiocManager::install("AnnotationFilter")
-          BiocManager::install("EnsDb.Hsapiens.v86")
+          BiocManager::install("GenomeInfoDbData",ask = FALSE,type = "binary")
+          BiocManager::install("GenomeInfoDb",ask = FALSE,type = "binary")
+          BiocManager::install("AnnotationDbi",ask = FALSE,type = "binary")
+          BiocManager::install("ensembldb",ask = FALSE,type = "binary")
+          BiocManager::install("AnnotationFilter",ask = FALSE,type = "binary")
+          BiocManager::install("EnsDb.Hsapiens.v86",ask = FALSE,type = "binary")
         shell: Rscript {0}
       - name: Check
         run: |