Updated BioJava libs to 4.2.11.

yeastrc · Mar 28, 2018 · 99f9681 · 99f9681
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commit 99f9681
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Showing 7 changed files with 3 additions and 3 deletions.
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-alignment-4.0.0.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-alignment-4.0.0.jar
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-alignment-4.2.11.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-alignment-4.2.11.jar
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-core-4.0.0.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-core-4.0.0.jar
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-core-4.2.11.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-core-4.2.11.jar
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-structure-4.0.0.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-structure-4.0.0.jar
diff --git a/proxl_web_app/WebRoot/WEB-INF/lib/biojava-structure-4.2.11.jar b/proxl_web_app/WebRoot/WEB-INF/lib/biojava-structure-4.2.11.jar
diff --git a/proxl_web_app/src/org/yeastrc/xlink/www/webservices/PairwiseSequenceAlignmentService.java b/proxl_web_app/src/org/yeastrc/xlink/www/webservices/PairwiseSequenceAlignmentService.java
@@ -20,9 +20,9 @@
 import org.biojava.nbio.alignment.Alignments;
 import org.biojava.nbio.alignment.Alignments.PairwiseSequenceAlignerType;
 import org.biojava.nbio.alignment.SimpleGapPenalty;
-import org.biojava.nbio.alignment.SubstitutionMatrixHelper;
-import org.biojava.nbio.alignment.template.SequencePair;
-import org.biojava.nbio.alignment.template.SubstitutionMatrix;
+import org.biojava.nbio.core.alignment.matrices.SubstitutionMatrixHelper;
+import org.biojava.nbio.core.alignment.template.SequencePair;
+import org.biojava.nbio.core.alignment.template.SubstitutionMatrix;
 import org.biojava.nbio.core.sequence.ProteinSequence;
 import org.biojava.nbio.core.sequence.compound.AminoAcidCompound;
 import org.biojava.nbio.structure.Structure;