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Reuse the CSD sh coefficients if you already have them. #591

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merged 6 commits into from
Nov 17, 2020

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arokem
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@arokem arokem commented Nov 7, 2020

Or create them for the first time to be reused later on.

This addresses some of #590. Still need to figure out how to convert SH coefficients from mrtrix into our APM.

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arokem commented Nov 9, 2020

Any thoughts about this @36000 ? This does not yet address the issue of bringing in sh coefficients from other software pipelines (e.g., qsirecon/mrtrix), but would save one round of CSD fitting that we are currently doing from happening. I think that in most cases, the order would be that APM would be computed first (for registration) and then these coefficients would get reused for tracking later on.

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36000 commented Nov 9, 2020

You can now remove our fit_anisotropic_power_map function, then LGTM

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arokem commented Nov 16, 2020

OK - this is now rebased! @36000 : when you get a chance, could you please review/merge?

@36000 36000 merged commit 87a85f7 into yeatmanlab:master Nov 17, 2020
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