Fixed missing input in get_reads_hlatyping_PE rule (tmp folder) that …

…caused error when using paired-end reads
ylab-hi · Jun 19, 2024 · 97eaae2 · 97eaae2
1 parent 8203034
commit 97eaae2
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/workflow/rules/hlatyping.smk b/workflow/rules/hlatyping.smk
@@ -56,7 +56,8 @@ rule get_reads_hlatyping_SE:
 
 rule get_reads_hlatyping_PE:
   input:
-    unpack(get_input_hlatyping_PE)
+    unpack(get_input_hlatyping_PE),
+    tmp="tmp/"
   output:
     fwd="results/{sample}/hla/reads/{group}_{nartype}_PE_R1.fq",
     rev="results/{sample}/hla/reads/{group}_{nartype}_PE_R2.fq"